BCR + GEX Tutorial Dataset: Single-cell BCR and gene expression data from tumor-draining lymph node and primary tumor of an ovarian cancer patient
BCR + GEX Tutorial Dataset: Single-cell BCR and gene expression data from tumor-draining lymph node and primary tumor of an ovarian cancer patient
Analysis-ready single-cell BCR and gene expression data from one ovarian cancer patient, used in the BCR + GEX Integration Tutorial. The dataset includes paired lymph node (P1_LN) and primary tumor (P1_PT) samples from the same patient, originally published in Nathan et al. (2026, Immunity). Files include Cell Ranger GEX output (.h5), BCR sequence data (AIRR-format TSV), processed BCR data (bcr_data.tsv), and an annotated integrated Seurat object (RDS). These files serve as input and checkpoint files for the three-part tutorial hosted here. Raw sequencing data are available on GEO under accession GSE319733.
Lymph/immunology, B cells, single-cell RNA-seq, Immcantation, Lymph Nodes/immunology, BCR, Single-Cell Gene Expression Analysis, ovarian cancer, Immune system, Memory B Cells, Seurat, Immune System, GEX, HGSOC, Lymph Nodes, BCR repertoire, Single-Cell Analysis, Immune System/immunology, Single-cell RNA-seq
Lymph/immunology, B cells, single-cell RNA-seq, Immcantation, Lymph Nodes/immunology, BCR, Single-Cell Gene Expression Analysis, ovarian cancer, Immune system, Memory B Cells, Seurat, Immune System, GEX, HGSOC, Lymph Nodes, BCR repertoire, Single-Cell Analysis, Immune System/immunology, Single-cell RNA-seq
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