github.com/yuhanhsu/wf-magma-hmagma/magma-gene
github.com/yuhanhsu/wf-magma-hmagma/magma-gene
wf-magma-hmagma Files for running MAGMA or H-MAGMA analysis workflows on Terra Dockerfile: containerize MAGMA and install dependencies cloudbuild.yaml: build and push docker image to Google Artifact Registry via Cloud Build magma-annotate.wdl, magma-gene.wdl, magma-set.wdl: define workflow corresponding to each MAGMA analysis step .dockstore.yml: sync workflows to Dockstore for import to Terra data/: miscellaneous files for runnning MAGMA, generated by scripts in data-scripts/ Approximate run time Cloud Build: a few minutes Dockstore: a few minutes magma-annotate workflow on Terra: a few minutes magma-gene workflow on Terra: depends on data size (mostly SNP count), usually ~1-5 hr with some >10 hr magma-set workflow on Terra: a few minutes
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