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TABLE 2 in Microsatellite development in the freshwater red alga Batrachospermum gelatinosum (L.) De Candolle (Batrachospermales, Rhodophyta)

Authors: Crowell, Roseanna M.; Shainker-Connelly, Sarah J.; Vis, Morgan L.; Krueger-Hadfield, Stacy A.;

TABLE 2 in Microsatellite development in the freshwater red alga Batrachospermum gelatinosum (L.) De Candolle (Batrachospermales, Rhodophyta)

Abstract

TABLE 2. — Microsatellite locus information for Batrachospermum gelatinosum (L.) De Candolle. Locus name, repeat motif, expected size, oligo sequences, agarose gel amplification profile,fluorochrome used on the forward oligo,and fragment analysis (FA) amplification profile. Note: fluorochrome and FA profile columns are only for loci tested on the capillary sequencer. Diallelic 1, we consistently observed two alleles when only one should be present in a haploid gametophyte.Exp.FAAllele sizeLocusMotifsizeOligo sequencesGel profileFluorochromeprofilerangeTotal allelesBgel_021AGG144 bpF: GTTTCGAAGCTCAGTGTCCGSingle6-FAMSingle138-1412R: GGAATTCTCGACGCACTTGGBgel_052AT312 bpF: GGGTCAATGCAAGTGGATGGSingleVICSingle310-3122R: AGACCTTGGAAGCTACGACGBgel_053AG327 bpF: GCTGTCATGTCGCCAGAATGSingleVICSingle298-3286R: GGAAGATGCACCTTTGGACGBgel_056AG273 bpF: CTTGCTCACGACTTTGGACCSingleVICSingle272-2845R: CGGAGTGAAACGAAACGAGGBgel_057AGC396 bpF: GCTGAATGAGGTGATGTGGCSinglePETSingle382-4127R: TGCACGTGGTTCTTGACAAGBgel_059AGG272 bpF: TTTGAGTACCACCACCCGTCSingleVICSingle252-2582R: GGGAAGTAGGCGTAGAAGGGBgel_067AG191 bpF: AGGCCAACATGCAGCAATAGSingle6-FAMSingle178-1823R: CAAGTTGCTTTGTTCGCTGCBgel_070AG130 bpF: TGGAGGCTAACGACATGGACSingle6-FAMSingle120-1407R: CCGCACAAAGTAGTCGATCGBgel_071AG226 bpF: TTATCCACTCCCGGTCTTGCSingleNEDSingle215-29914R: GTTTGAAGCGTGGGAAGAGGBgel_073ACG294 bpF: TCGACTTTGCAAACTCCAGCSingleVICSingle272-3086R: GGTACGTGTGGACAAACGACBgel_035ACG424 bpF: GTTGGCGGAAATGGAGTGAGSinglePETDiallelic1––R: CTTCGACATCATGCTGAGCGBgel_048AG348 bpF: AACTTGGCCACGCATTCATCSinglePETDiallelic1;––R: CAATGGTCATCTGCCGTGTCpoor amp.Bgel_006ATC200 bpF: CTCGTTCAAAGCTAGGCGTGSingleNEDMultiple––R: TAAACAGGCCCTATGTCCGGBgel_011AGG261 bpF: CTGCTTCGACACCAACGTACSingleNEDMultiple––R: TCTCTGCCTCTCCATTCACGBgel_031AGCC372 bpF: CTCTGGTGCGCTGTTTATCGSinglePETMultiple––R: ACCAAACGGAAACAGCTGACBgel_041AAC211 bpF: TGAAGGCGTTGTTGGGAAACSingleNEDMultiple;––R: GGTGGATTCAAGCGCCTATCpoor amp.Bgel_047AAT183 bpF: TAAGGTCGCTTCTCCACCACSingle6-FAMMultiple––R: ATTCAAGCCTTCGAAGCTGCBgel_058AG367 bpF: CCGTTTCTGCAGTCGTCATCSinglePETMultiple––R: CCTGAAGCTGCTGGAAATCGBgel_001AAC292 bpF: GTTGACCGGTGTTCAAGTCGMultiple––––R: GATTCGTCGCTTCGGAATCCBgel_002AAC166 bpF: GCGGACACAAAGCAGTAGACMultiple––––R: ACAACAACGACAATGGACCGBgel_003AGC241 bpF: ACAGGAGTATGCAGAACCGGMultiple––––R: GAAAGCTGCACTCCACCATCBgel_004AGG255 bpF: AGTACACGAGCCACCATCTCMultiple––––R: TGAGAGGAAGCAGCAGTCACBgel_005AAC231 bpF: GTGGAGCCAACACGTTACGMultiple––––R: TCCTGGAGTGTTACTGGCTGBgel_007AAG141 bpF: GGTGCTGGTTGATTGATGGGMultiple––––R: TGAGAACGAGGAGGCCAATCBgel_008AGC308 bpF: TTCGGTTCCGGTTCTACTCCMultiple––––R: GTCTTCCGTCTTTGCCATCGBgel_009ATC273 bpF: GCGTAATGGTGGTGGTCAAGMultiple––––R: ACCACTGGACGAGATGACTGBgel_010AG277 bpF: AGGCAGTTATCTTCCCGACCMultiple––––R: CACCGGATACTGACGTTTGCBgel_012AGC346 bpF: ACCACCTAGTTCTGCACCTCMultiple––––R: GACGATGCATGCGAGAGATGBgel_013AGC302 bpF: TGAAGGAGGCAGAGATGAGCMultiple––––R: CGTTCATCACTCGCGAAGACBgel_014AGC130 bpF: GCAATATGAGGCAGCAAGGGMultiple––––R: TCTCAGCACGACACACTACCBgel_015ATC167 bpF: AGTGGATTGATTGTGCTGCGMultiple––––R: CCATCTTCGGTGCGTCTTTCBgel_016AG213 bpF: ACGGCGATGATTTGTTTCCCMultiple––––R: AACAGTACTCCGCTCTCGTCLocusMotifsizeOligo sequencesGel profileFluorochromeprofilerangeTotal allelesBgel_017AAG176 bpF: TCCTTTCTCCTCCTCGCAACNo amp.––––R: GACCTGGACGTTTGAATCGCBgel_018AAG290 bpF: GCACAGATACATTCGGCGTCMultiple––––R: TCCCATCGAACATCCACCTCBgel_019AT241 bpF: GTACTTATGTGCGGCCTTGGMultiple––––R: CAGTCCCGGTCTATGTAGGCBgel_020AG315 bpF: TAGAATGAGACGGGCGATCGMultiple––––R: CCGCTTTGAGTCCGTAAACCBgel_022AC298 bpF: GCCATCCTCTTGCCACATTCNo amp.––––R: GTTTGGGTTCCGTCTGTCAGBgel_023ACT161 bpF: TGTCGACCATAAGCTCCGAGNo amp.––––R: GTCACCTGGGCAAGCATTACBgel_024AAC236 bpF: TTGCGCAGATTCACGAACTGMultiple––––R: AGGTGATAAGAGGCGGTGACBgel_025ACT244 bpF: TGAGTGATTGCGGCCATTTCNo amp.––––R: AGTGGCACCTCGATATACCGBgel_026AGC282 bpF: TCTGATGGTAGGGTTGCTGGMultiple––––R: AGAGGGCTGTAGTGAATCGGBgel_027AGG190 bpF: ATCGGTCAAGAGTTGCATGCMultiple––––R: ACGTCTCTATTCCATCGCCCBgel_028AC389 bpF: ATTGCTCCGTCATTGGCATGNo amp.––––R: ACTCACACCACACTCCGTAGBgel_029ACTC330 bpF: TCGCGCTCATTTCCAAACTCMultiple––––R: TCAGTCGATCAAGGAGCTGGBgel_030AAT280 bpF: GCTGCGTCACTCTTCTCATGNo amp.––––R: TTTCCTCTTGTTGTGCTCGCBgel_032ATC226 bpF: GATTCCAAATACCACCGGCGMultiple––––R: ATCGCCTGGGATGATCGATCBgel_033ACGG159 bpF: CCTGCACTTGTGACGATTCCNo amp.––––R: GGACGCTTCGAAGGAACATCBgel_034ATC281 bpF: CGTCGTCGTCAATGTTCCTGMultiple––––R: CCTTGCTGTGGAACTTGGTGBgel_036AC179 bpF: TCGTCCTGGTCCATGCTAAGNo amp.––––R: CCTGCCCGTTTGCTTATGAGBgel_037AAC179 bpF: CCTCCCAACGAAACATCAGCNo amp.––––R: ATTACGAGTGTCACCGGGAGBgel_038AGAT159 bpF: CTATTTCGATTCGTCGCGGGMultiple––––R: AAGACAGAACCTCCGCTCAGBgel_039AAT148 bpF: CCACTTCGGTTTCAGGAAGCNo amp.––––R: CGGTCAGAATCATCACGTGCBgel_040ATC140 bpF: TCCTCTCCATTCAGCAGTCGMultiple––––R: CAAGAGAAGCTGAAGACGCGBgel_042AC418 bpF: TGGACATACTCGCTCCACAGNo amp.––––R: GCAGCGCTTAGAGTGTGAAGBgel_043AAT275 bpF: TCCAACTCCTCAACGACCTGMultiple––––R: TTGGAGCAGAATTCGTTCGCBgel_044AAC333 bpF: AGCCAATACCAACCCTCGAGMultiple––––R: TGCATCATTCAACTCGCCACBgel_045AAC239 bpF: ACCGAACAAGCACTTCAACCMultiple––––R: ATGACGTCGTTGGCAAGAACBgel_046AAC173 bpF: CAGCAGCGAGTGGAAAGTACMultiple––––R: GCTACACGAAGATGGGCAACBgel_049AATT395 bpF: GTTCGACGGTCATCAGCATGNo amp.––––R: TCTTCCAACCCTGCTCTGACBgel_050AGG251 bpF: AAGTGGAGGAGGAATGGGTGNo amp.––––R: ACCTCTGCCTCACTCATTCCBgel_051AAT147 bpF: CATCATATCCCTGCCCTCCCMultiple––––R: AATGCAGCCATGACTCGTTGBgel_054AC199 bpF: TGCGTTGTCTTCTTTGCTCCNo amp.––––R: CATCCGCCACAGAAACCATGBgel_055AC282 bpF: TCAGAGGAATGGATGGACGCMultiple––––R: GATGTTCCGTGCAGATCAGCBgel_060AAG226 bpF: CTTTCTTCACCGACGCTGACNo amp.––––R: CCGGGCTCAGAAATTTCGTCBgel_061AAAT137 bpF: CAGATGATTCGAGCGATGCCNo amp.––––R: CACGGGCATGACAAATCTCCLocusMotifsizeOligo sequencesGel profileFluorochrome profilerangeTotal allelesBgel_062AG228 bpF: CGAACAACAGACATAGCGGGNo amp.––––R: TCTTCCTGCGGCTGTAAGAGBgel_063AT148 bpF: GTTCACCTGTGGAAGCGAAGMultiple––––R: AGTAATCGTCTCGCCTGGTGBgel_064AAG315 bpF: GCTTTGACCGAGTTGTACCGMultiple––––R: CGATTAGGCGGTTGTGTTGGBgel_065AAG226 bpF: GTTGACGACGCTTCATCGAGMultiple––––R: TGGGACTTCGAGTGGTTGAGBgel_066AAC157 bpF: TACACGTGTGAGGAGGCTTCMultiple––––R: ATTCACATCATCACCAGCGCBgel_068AGC139 bpF: TGCTGGACTAGTGACAGTGGMultiple––––R: TGCCTCACTACTGTCACCACBgel_069AGC217 bpF: TGGGAGAAGACGAGCTGATGMultiple––––R: GGCTCAGAATCATGCTGACGBgel_072AAG390 bpF: GCCATCTTCATACGTCGCTGMultiple––––R: ACTTTGATCAGGCTCTCGGG

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