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ZENODO
Dataset . 2026
License: CC BY
Data sources: Datacite
ZENODO
Dataset . 2026
License: CC BY
Data sources: Datacite
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SPAMO: Spatial Multi-Omics Integration via Dual-Graph Encoding and Cross-Modal Interaction

Authors: Su, Houcheng;

SPAMO: Spatial Multi-Omics Integration via Dual-Graph Encoding and Cross-Modal Interaction

Abstract

Motivation: Spatial multi-omics can delineate tissue architecture more faithfully than any single modality, but unsupervised spatial domain detection remains difficult because different modalities exhibit distinct sparsity patterns, noise characteristics, and graph structure. Existing methods already couple spatial and multimodal signals in different ways, yet spot-level cross-modal dependencies can still be underexploited. We therefore present SPAMO, an unsupervised framework that couples adaptive dual-graph encoding with interaction-aware multimodal fusion.Results: SPAMO adaptively balances spatial adjacency and feature similarity during unimodal encoding, refines feature graphs during training, and performs cross-modal interaction before gated fusion, while regularizing the shared embedding with complementary global and local structural objectives. Across Human Lymph Node, Mouse Brain, and simulated benchmarks, SPAMO achieves the strongest overall clustering performance, with the clearest gains on the real datasets. These results support the value of modeling cross-modal interaction and graph structure jointly for spatial domain identification.

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
0
Average
Average
Average