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Data repository associated with 'A Functional Map of the Human Intrinsically Disordered Proteome'

Authors: Pritisanac, Iva;

Data repository associated with 'A Functional Map of the Human Intrinsically Disordered Proteome'

Abstract

ES_MAP.zip a hierarchically clustered map of the human IDR-ome .cdt and .gtr files - outputs of Cluster3.0 software can be visualized using JavaTreeView (see Tutorial_ES.pdf) TUTORIAL.zip, information on: visualization and analysis of the human IDR-ome map search for proteins of interest and exploratory analyses of clusters automatic export and analysis of exported clusters (code available at https://github.com/IPritisanac/ES_PW) IDROME_SEQUENCES.zip human proteome fasta file IDRome fasta file SPOT-Disorder v1.0 disorder boundaries 13 044 unique protein sequences with at least one IDR (>=30 amino acids) 21 252 total unique human IDRs IDR_ALN.zip alignments of IDR sequences across ENSEMBL orthologs 19 459 IDR alignments UniProt ID and IDR boundaries for the human sequence are indicated in the name of the file FAIDR_TSTATS.zip hierarchical clustering of FAIDR t-statistics for 148 GO terms .cdt, .gtr files from Cluster3.0 can be visualized using JavaTreeView reveals the most predictive molecular features for the top performing 148 models CLUSTERS_EXPLORE.zip clusters obtained through exploratory analysis of the map provided in ES_MAP.zip 93 exported clusters in .cdt file format CLUSTERS_AUTO.zip clusters extracted from the hierarchically clustered IDR-ome map at a range of distance thresholds (0.4 - 0.8) in .cdt file format distance refers to the uncentered correlation distance between vectors of Z-scores representing human IDRs clusters extracted at different distance thresholds are split into separate archives AUTO_GO_FEATS.xlsx - summary of GO-term overrepresentation and feature enrichment analyses; each distance threshold is in a separate sheet FAIDR_HIGH_AUC_PPV_GO.zip target files with annotations of 148 GO terms for which good quality FAIDR models could be obtained (AUC >= 0.7, PPV >= 0.4) file format: three columns; 1st: IDR ID (includes IDR boundaries); 2nd: protein UniProt ID; 3rd: annotation of the protein to a GO term (1 if known to be associated with the GO term, 0 if not) DATASETS.zip supplementary dataset accompanying manuscript (PNAS 2026)

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    popularity
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    influence
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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
0
Average
Average
Average