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ZENODO
Dataset . 2026
License: CC BY
Data sources: ZENODO
ZENODO
Dataset . 2026
License: CC BY
Data sources: Datacite
ZENODO
Dataset . 2026
License: CC BY
Data sources: Datacite
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Boltz2 Structure Predictions of Proteinbase Design Submissions

Authors: Bililign, Yishak;

Boltz2 Structure Predictions of Proteinbase Design Submissions

Abstract

Boltz2 results from bound complex structure predictions generated for selected Proteinbase submissions. Each binder design is written in an output directory with the Proteinbase unique identifier in the name (i.e. "boltz_results_config_/") - hyperparameters used to generate each prediction are in the "lightning_logs/" sub-directory and predicted structures, confidence metrics, and pLDDT/pAE/PDE matrices are found within the "predictions/" sub-directory. results.tar.bz2 Results for 952 selected binder designs against multiple targets from a mix of Proteinbase collections (https://proteinbase.com/collections). nipah_results.tar.bz2 Results for 83 Nipah binder designs from the Nipah Binder Competition (https://proteinbase.com/collections/nipah-binder-competition-results) - 3 independent predictions generated for each design to evaluate variability in confidence metrics. rbx1_results.tar.bz2 Results for 150 RBX1 binder designs from the RBX1 Binder Design Competition (https://proteinbase.com/collections/gem-x-adaptyv-rbx1-binder-design-competition-results).

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
0
Average
Average
Average