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github.com/CDPHE-bioinformatics/cdphe-influenza-wastewater-analysis/freyja_other_pathogens

integration_instructionsResearch softwarekeyboard_double_arrow_right Software Under curationPublisher:Zenodo
Authors: CDPHE-bioinformatics;

doi: 10.5281/zenodo.19955129

github.com/CDPHE-bioinformatics/cdphe-influenza-wastewater-analysis/freyja_other_pathogens

Abstract

cdphe-influenza-wastewater-analysis WDL workflows for 1) Freyja analysis and 2) alignment of clinical samples amplified with universal primers to Freyja references. The Freyja workflow is flexible enough that it can be run on any freyja pathogen.

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