Simulation Data for: Intramolecular interactions between folded and disordered regions shape ubiquilin structure and function Authors: Jess Niblo, Nirbhik Acharya, Max Watkins, Thuy P. Dao, Carlos A. Castañeda, Shahar Sukenik This repository contains the trajectory data for molecular dynamics simulations and reconstructed ensembles included in "Intramolecular interactions between folded and disordered regions shape ubiquilin structure and function". File description: Representative_Simulations.zip: representative trajectories from CALVADOS simulations for Dsk2 FL, dHS1, dHS2, and dHS3 in the open and closed topologies Reconstructed_Ensembles.zip: reconstructed ensembles for Dsk2 FL, dHS1, dHS2, and dHS3 that were derived from experimental SAXS See analysis repository at: https://github.com/sukeniklab/UBQLN_interactions_2026