D3-DNA: Data and Model Weights for DNA Discrete Diffusion
D3-DNA: Data and Model Weights for DNA Discrete Diffusion
Data files and pretrained model weights for D3: DNA Discrete Diffusion, a discrete diffusion framework for conditional generation of DNA regulatory sequences. v2 additions: adds D3_Conv_DeepSTARR.pth and D3_Conv_MPRA_HepG2.pth (SEDD-format convolutional backbones; d3_dna.io.load_checkpoint handles both .ckpt and .pth). README updated. v3 additions: adds Oracle_promoter.sei.names feature mask necessary to run inference with Oracle_Promoter.pth.tar README updated. Package: https://github.com/anirbansarkar-cs/d3-dna Research code: https://github.com/anirbansarkar-cs/D3-DNA-Discrete-Diffusion
- Cold Spring Harbor Laboratory United States
generative models, regulatory sequences, deep learning, DNA, MPRA, discrete diffusion
generative models, regulatory sequences, deep learning, DNA, MPRA, discrete diffusion
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