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ZENODO
Dataset . 2026
License: CC BY
Data sources: ZENODO
ZENODO
Dataset . 2026
License: CC BY
Data sources: Datacite
ZENODO
Dataset . 2026
License: CC BY
Data sources: Datacite
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AF3 prediction for protein-NA and protein-ligand complex

Research datakeyboard_double_arrow_right Dataset 13 Apr 2026 English Publisher:Zenodo
Authors: Meng, Haowei; Zhang, Sihan; Yi, Chengqi;

doi: 10.5281/zenodo.19555205 , 10.5281/zenodo.19555204

AF3 prediction for protein-NA and protein-ligand complex

Abstract

This dataset contains 3D structural predictions and contact probabilities (CP) for various biomolecular complexes, generated using AlphaFold3 (v3.0.0). The collection comprehensively covers: Deaminase-RNA Binary Complexes (APOBEC3A, TadA8e) CRISPR-Cas Ternary Complexes (Cas9 and Cas12a off-target predictions and tiling mismatches) AI-Designed DNA-Binding Proteins Protein-Ligand Complexes (MaeB variants with NAD+/NADP+) Contact Probability (CP) Benchmarks (various protein variants and PDB sequence matches)

Related Organizations
Keywords

Cas12a, TadA8e, APOBEC3A, Cas9, AlphaFold3, off-target

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    popularity
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    influence
    This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
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    impulse
    This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
0
Average
Average
Average