What's Changed cwl_utils 0.41 by @mr-c in https://github.com/common-workflow-language/cwltool/pull/2225 pin pygments by @mr-c in https://github.com/common-workflow-language/cwltool/pull/2226 [Snyk] Fix for 4 vulnerabilities by @mr-c in https://github.com/common-workflow-language/cwltool/pull/2227 Fix all_non_null single source element by @LanderOtto in https://github.com/common-workflow-language/cwltool/pull/2220 Deps build(deps-dev): update setuptools-scm requirement from <10,>=8.0.4 to >=8.0.4,<11 by @dependabot[bot] in https://github.com/common-workflow-language/cwltool/pull/2222 build(deps): bump codecov/codecov-action from 5 to 6 by @dependabot[bot] in https://github.com/common-workflow-language/cwltool/pull/2223 build(deps): update galaxy-tool-util requirement from !=23.0.1,!=23.0.2,!=23.0.3,!=23.0.4,!=23.0.5,<25.2,>=22.1.2 to >=22.1.2,!=23.0.1,!=23.0.2,!=23.0.3,!=23.0.4,!=23.0.5,<26.1 by @dependabot[bot] in https://github.com/common-workflow-language/cwltool/pull/2229 Full Changelog: https://github.com/common-workflow-language/cwltool/compare/3.1.20260315121657...3.2.20260411152607