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ZENODO
Software . 2026
License: CC BY
Data sources: ZENODO
ZENODO
Software . 2026
License: CC BY
Data sources: Datacite
ZENODO
Software . 2026
License: CC BY
Data sources: Datacite
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Code for: Cerebellar neural populations orchestrate dopamine reward signaling with single-trial precision

Authors: Lu, Liang-Yin; Chen, Peng; Liang, Ting-Yu; Chen, Liang-Ying; Liu, Wen-Chuan; Chen, Wei-Xiang; Lee, Jye-Chang; +2 Authors

Code for: Cerebellar neural populations orchestrate dopamine reward signaling with single-trial precision

Abstract

Source codes used for data analysis in Cerebellar neural populations orchestrate dopamine reward signaling with single-trial precision, including MATLAB and Python scripts for DCN-VTA fiber photometry analysis, single neuron reward detection, IPS detection, bursting detection, spike-phase coupling, and SVM (python script). Additionally, R scripts were used for modeling trial-by-trial Q values and RPE in the reward foraging task. README: 1. Dataset structure: Raw data and code are organized in the following folder hierarchy: f02_XXX/. % (figure number_experiment) ├── A01_XXX.m % main analysis scripts (A01, A02...) └── Example/ ├── XXX.mat % demo dataset └── ... Each folder corresponds to one analysis module for figure. 2. System Requirements: Hardware We test codes on windows 11: CPU:Intel i9-12900KF, RAM:128GB, GPU(if needed):NVIDIA RTX 3070 Ti Software a. MATLAB:R2020b b. R version 4.4.0 with RStudio (for behavioural modelling only) c. Python 3.7 via Anaconda Navigator (for DCN and VTA single unit decoding). Dependencies: Numpy, Scipy, Pandas, Matplotlib, sklearn, HappyML(https://github.com/cnchi/HappyML) No non-standard hardware is required. 3. Setup and steps: a. Download the source code from: Code: https://doi.org/10.5281/zenodo.19331923 b. Unzip packages and place them in a working directory (example data are already inside). c. Launch MATLAB (or Rstudio/Spyder, depending of pipeline) d. Ensure the supporting functions are added to the MATLAB path. e. Open the main script: A01_XXX.m d. Run the script. The script will automatically load example files from the Example folder and perform all the processes. Typically, you don't need to change any parameters. 4. Output: The script will produce corresponding XXX.mat file, either in the same directory as the script, or in an Output folder. 5. (Optional) Reproducibility: You can find all dataset in https://doi.org/10.5281/zenodo.19345221

Keywords

cerebellum, Neural coding, reward, Neuroscience

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
0
Average
Average
Average