Refactors QuaC to add native support to QC fastq files using FastQC and Fastq Screen. FastQC and Fastq Screen commands used are based on those in the small_variant_caller_pipeline. Tool versions were upgraded and switched from container+conda env to container-only set up. Rule multiqc_rename_config was brought in as well from the small_variant_caller_pipeline. --include_prior_qc is still used but only for Picard markduplicates. Updates conda env to run quac. Switched from snakemake-minimal to full snakemake for pandas. Updates input data set up and configs for system testing. Updates docs. What's Changed Refactors to natively run QC on FASTQ files by @ManavalanG in https://github.com/uab-cgds-worthey/quac/pull/100 Full Changelog: https://github.com/uab-cgds-worthey/quac/compare/1.8...1.9