Gene counts and TPM matrices for 2574 RNA-seq samples. See supplementary tables 1 and 3 for metadata. Samples were uniformly processed using RAPiD-nf, an efficient RNA-Seq processing pipeline implemented in the NextFlow framework. Following adapter trimming with Trimmomatic (0.36), all samples were aligned to the GRCh38.primary_assembly build of the human reference genome using STAR (2.7.2a), with indexes created from GENCODE, version 30. Gene expression was quantified using RSEM (1.3.1). Quality control was performed using SAMtools and Picard.