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Other literature type . 2026
License: CC BY
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Presentation . 2026
License: CC BY
Data sources: Datacite
ZENODO
Presentation . 2026
License: CC BY
Data sources: Datacite
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Peeking into the black box of GROMACS performance

Authors: Alekseenko, Andrey; Páll, Szilárd;

Peeking into the black box of GROMACS performance

Abstract

Molecular dynamics simulations are computationally intensive, making the efficient use of hardware crucial. In this webinar, we will explore the practical strategies for maximizing GROMACS simulation speed. By demonstrating how to interpret mdrun logs, we will “open the black box” of MD performance so that users can understand what is happening inside GROMACS during a simulation. We will discuss how system setup and properties influence performance, how these factors interact with hardware and software stacks, and how it all can be understood from GROMACS log files. Attendees will learn best practices for configuration and parallelization to ensure their simulations run as efficiently as possible. Additionally, we will also introduce a new benchmark suite for GROMACS, designed to provide a standardized framework for assessing performance across a variety of systems.

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
0
Average
Average
Average
Green
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