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ZENODO
Dataset . 2026
License: CC BY
Data sources: ZENODO
ZENODO
Dataset . 2026
License: CC BY
Data sources: Datacite
ZENODO
Dataset . 2026
License: CC BY
Data sources: Datacite
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ROCIT Example Data and Cell Atlas Reference

Authors: Baker, Toby; Spellman, Paul;

ROCIT Example Data and Cell Atlas Reference

Abstract

This release contains two files for use with the ROCIT toolkit for read-origin classification in tumors using CpG methylation data obtained from long-read whole-genome sequencing. cell_map_reference_atlas.parquet — Precomputed reference CpG methylation atlas derived from normal human cell types. This file is required by ROCIT for tumor-origin classification. Derived from the normal human cell-type methylation data released by Loyfer et al. Loyfer, N., et al. (2023). A DNA methylation atlas of normal human cell types. Nature. HG008_example_data.tar — Example input files for the ROCIT preprocessing pipeline, derived from HG008 tumor and matched normal HiFi reads sequenced with Pacbio Revio. Includes a subsampled BAM file (with index), copy number, haplotype, variant, and cluster annotation tables. McDaniel, J.H., Patel, V., Olson, N.D. et al. (2025). Development and extensive sequencing of a broadly-consented Genome in a Bottle matched tumor-normal pair. Scientific Data.

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
0
Average
Average
Average