Epitope_Match_RD: HIV Epitope Matching Pipeline (v1.0.0)

Epitope_Match_RD is a Python-based bioinformatics pipeline for matching sequencing reads to predefined HIV epitopes referenced to HXB2 coordinates. The pipeline applies a configurable identity threshold (≥80% by default) to quantify epitope-level sequence similarity. The repository includes a SLURM array runner for high-throughput processing, curated epitope coordinate definitions, and reference sequence resources to enable reproducible analysis in HIV sequencing studies.

Keywords

Viral Sequencing, bioinformatics, SLURM, HXB2, HIV, epitope matching,

Impact byBIP!

	selected citations These citations are derived from selected sources. This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).	0
	popularity This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.	Average
	influence This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).	Average
	impulse This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.	Average

Found an issue? Give us feedback

0

Average