Added Implemented fastlint to filter low complexity reads and improve Flye assembly performance. --fastlint_threshold parameter can be used to adjust DUST filter stringency. --run_fastlint can be used to disable DUST filtering step. Changed Updated to wf-template v5.7.1 to maintain compliance with our latest wf-template standard, changing: The README docs sections to move related protocols after inputs and outputs. Links in the README to point at our new documentation website. Our pre-commit configuration to resolve a dependency issue in our test infrastructure. Fixed Resolved an issue causing Bakta annotations to fail in cloud runs. Updated the Docker container to include the "light" Bakta database. Removed the functionality that allowed the workflow to download an externally stored Bakta database, eliminating the need for an internet connection on first execution. Removed the --bakta_db_type parameter. To use the "full" Bakta database, it must be downloaded separately and provided to the workflow using the --bakta_db parameter. Fixed an issue where stderr could be written to versions.txt, causing the workflow to crash.