These data include as follows: 1) all datasets including alignments for each gene and concatenated sequence; 2) all phylogenetic results including additional analyses such as mtGene-only, nuclearGene-only, amino acid, and excluding 3rd codon positions; 3) BEAST analysis including xml file and its results; 4) Ancestral states reconstruction with Mesquite and BayesTraits; 5) Gene information including completeness, informativeness, heterogeneity, and saturation; 6) microhabitat information with PCoA analysis; 7) OUwie analyses with six continuous traits.