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https://doi.org/10.31219/osf.i...
Article . 2025 . Peer-reviewed
License: CC BY
Data sources: Crossref
ZENODO
Preprint . 2026
License: CC BY
Data sources: Datacite
ZENODO
Preprint . 2026
License: CC BY
Data sources: Datacite
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Which gene combination to test in wet lab? A demonstration of machine learning based search engine using ETC-1922159 static data

Authors: Sinha, Shriprakash;

Which gene combination to test in wet lab? A demonstration of machine learning based search engine using ETC-1922159 static data

Abstract

Biologists/oncologists often search for a range of combinations of genes/proteins that work synergistically in cells in various processes. This search is often difficult. To address this issue, a recent design of a machine learning based search engine was published recently. To demonstrate the effectiveness of this search engine on real life data sets, the data set containing recordings of up/down regulated genes generated from colorectal cancer cells which were treated with PROCN-WNT inhibitor drug ETC- 1922159 was taken. The regulation of the genes were recorded individually, but it is still not known which higher (≥ 2) order gene combinations might be playing a greater role after the administration of the drug. In order to reveal the priority of these higher order combinations among the up/down-regulated genes in static data, I used an adaptation of the published search engine. The engine reveals unknown/untested/unexplored as well as wet lab tested combinations. Based on these rankings, biologists/oncologists would not have to struggle to discover a particular gene/protein combination of interest for further wet lab test, that might be involved in a particular phenomena.

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
0
Average
Average
Average
Related to Research communities
Cancer Research