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BaderIntegration

Authors: Dallas Trinkle; Yu, Min;

BaderIntegration

Abstract

Bader integration using weighted integration This code takes the grid-based output from VASP as from CHGCAR or AECCAR files and performs Bader integration over the basins of attraction. The call weight_int CHGCAR [grid1] [grid2] ... uses the first grid to define atom-centered basins of attraction, and integrates each grid-defined quantity over those same basins of attraction. At a minimum, one grid file can be used. The grids must all be compatible: same grid dimensions defined for each. It does not check that the atomic coordinates are the same, and it only reads in the first grid found in the file; thus, it requires some hacking of the files in order to, e.g., integrate the magnetization. There are a few options available: -a assigns volumes to true basins (maxima) rather than explicitly to atoms. -s divides (scales) the integral by the total volume of the cell; required to compute a Bader charge. -o base output the weights on a grid, to be used for visualization; "base" is the name of the weight file: base0001 -n N output only the weight for atom/basin N -V use Voronoi volumes instead of Bader (basins of attraction) -v/-t verbose or testing (extra verbose) modes

{"references": ["M. Yu and D. R. Trinkle, \"Accurate and efficient algorithm for Bader charge integration.\" J. Chem. Phys. 134, 064111 (2011).", "M. Yu, D. R. Trinkle, and R. M. Martin, \"Energy density in density functional theory: Application to crystalline defects and surfaces.\" Phys. Rev. B 83, 115113 (2011).", "M. Yu and D. R. Trinkle, \"Au/TiO2(110) interfacial reconstruction stability from ab initio.\" J. Phys. Chem. C 115, 17799-17805 (2011)."]}

Keywords

Bader integration, basin of attraction, atoms in molecules

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