The increasing demand for natural products has attracted special attention to microalgal biomass, which is often cultivated in open ponds. These systems are vulnerable to biological contamination, which reduces both the yield and quality of the biomass. The contamination process, particularly through airborne transport of unwanted microalgae, fungi, or bacteria, is poorly understood. In this study, bioaerosols were collected in quartz filters through a low-volume sampler located at different locations at the CIESOL demonstration plant (Almeria, Spain). The samples were analysed using metagenomics and SEM-EDS to assess the number of cells and the microbial diversity of the filters. The results revealed airborne transport of microalgae across different locations, with a gradual decrease in cell numbers as the distance from the source increased (p<0.05). Additionally, although different microalgal strains were detected in the filters, the most abundant belonged to the Chlorella family. The results obtained from this research highlight how microalgae and other bioaerosols can travel over various distances from the original source, with the potential to contaminate open ponds and even closed photobioreactors.