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Dataset . 2026
License: CC BY
Data sources: Datacite
ZENODO
Dataset . 2026
License: CC BY
Data sources: Datacite
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Data for "Leveraging image processing techniques to visualize sub-cellular domains in optical photothermal infrared imaging"

Authors: Holub, Elisabeth; Hondl, Nikolaus; Petay, Margaux; Reindl, Sarah; Honeder, Sophie; Tomin, Tamara; Ramer, Georg;

Data for "Leveraging image processing techniques to visualize sub-cellular domains in optical photothermal infrared imaging"

Abstract

This dataset consists of optical photothermal infrared (O-PTIR) images of two lung cancer cells (H1299). The cells were fixed before imaging. Enclosed files: image_Fixed_LungCancer_cell1.cdf: hyperspectral image of cell 1 image_Fixed_LungCancer_cell2.cdf: hyperspectral image of cell 2 spectra.cdf: spectra of cell 2 All files are in netCDF format. Hyperspectral images The images have four dimensions wavenumber: spectral axis x: fast axis y: slow axis trace_retrace: direction of movement during recording the image The associated coordinates are: xpix: pixel position in x ypix: pixel position in y trace: boolean trace/retrace pixel_size_X: size of pixel in x in nanometers pixel_size_Y: size of pixel in y in nanometers x_len: size along x in nanometers y_len: size along y in nanometers duty_cycle: duty cycle of laser during recording wavenumber: wavenumber of this image Each image contains six channels which are 4D ( wavenumber, trace_retrace,y,x) 64 bit float arrays: X: lock-in amplifier X component Y: lock-in amplifier Y component auxin1: voltage corresponding to probe laser brightness power_x: lock-in X component of MCT detector signal power_y: lock-in Y component of MCT detector signal The amplitude signal calculate from X and Y is the raw O-PTIR signal. It is normalized to the IR laser power by dividing by the amplitude of power_x and power_y and normalized to the sample transmission by dividing by auxin1. Spectra The spectra have two dimensions wn: spectral axis spec_index: spectral_index The associated coordinates are: wn: spectral axis in wavenumbers (cm⁻¹) pos_x: x position [nm] pos_y: y position [nm] Each image contains six channels which are 4D ( wavenumber, trace_retrace,y,x) 64 bit float arrays: x: lock-in x channel y: lock-in y channel frequency: laser repetition rate in hertz phase: lock-in phase dio: ? trigger: ? auxin0: DC signal of ? amplitude: lock-in amplifier amplitude power: laser power

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
0
Average
Average
Average
Related to Research communities
Cancer Research