github.com/iwc-workflows/cutandrun/main

Complete CUT&RUN/CUT&TAG analysis workflow for paired-end sequencing data. Processes raw FASTQ files through adapter removal (cutadapt) and alignment (Bowtie2 with dovetail option enabled). Applies quality filtering (MAPQ ≥ 30, concordant pairs only), converts BAM to BED format, and performs peak calling using MACS2 with parameters optimized for the punctate signal profile characteristic of CUT&RUN/CUT&TAG experiments.

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	selected citations These citations are derived from selected sources. This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).	0
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