
This repository provides publicly available data files used in the study "Molecular trick to reverse SN2 step in a haloalkane dehalogenase", accepted for publication in Chem Catalysis. The dataset includes data for the LinB variants described in the manuscript (LinB-wt, LinB-H272F, LinB-H272N): MDs: Molecular dynamics simulations (MDs), and their respective analysis (RMSD, B-factors, specific distances, dihedral angles, etc.) ASMDs: Adaptive Steered Molecular Dynamics simulations (ASMDs) and the respective PFM profile, for different tunnels, studied with different ligands (substrate and product), simulated in five replicas Kinetics: Rate and equilibrium constants derived from transient kinetic data, and the respective raw data These files support the results and conclusions presented in the manuscript:Toul, M.; Marques, S.M.; Gao, T.; Bernhardova, H.; Vavra, O.; Novakova, V.; Damborsky, J.; Bednar, D.; Prokop, Z.; Marek, M. "Molecular trick to reverse SN2 step in a haloalkane dehalogenase", Chem Catalysis, 2026. (The complete citation will be updated after its publication.)
molecular dynamcis (MDs), Rate and equilibrium constants, transient kinetics, Biocatalysis, adaptive steered molecular dynamics (ASMDs), haloalkane dehalogenase, enzyme access tunnels
molecular dynamcis (MDs), Rate and equilibrium constants, transient kinetics, Biocatalysis, adaptive steered molecular dynamics (ASMDs), haloalkane dehalogenase, enzyme access tunnels
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