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ZENODO
Dataset . 2026
License: CC BY
Data sources: Datacite
ZENODO
Dataset . 2026
License: CC BY
Data sources: Datacite
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Dataset for: Molecular trick to reverse SN2 step in a haloalkane dehalogenase

Authors: Marques, Sérgio; Toul, Martin; Vavra, Ondrej;

Dataset for: Molecular trick to reverse SN2 step in a haloalkane dehalogenase

Abstract

This repository provides publicly available data files used in the study "Molecular trick to reverse SN2 step in a haloalkane dehalogenase", accepted for publication in Chem Catalysis. The dataset includes data for the LinB variants described in the manuscript (LinB-wt, LinB-H272F, LinB-H272N): MDs: Molecular dynamics simulations (MDs), and their respective analysis (RMSD, B-factors, specific distances, dihedral angles, etc.) ASMDs: Adaptive Steered Molecular Dynamics simulations (ASMDs) and the respective PFM profile, for different tunnels, studied with different ligands (substrate and product), simulated in five replicas Kinetics: Rate and equilibrium constants derived from transient kinetic data, and the respective raw data These files support the results and conclusions presented in the manuscript:Toul, M.; Marques, S.M.; Gao, T.; Bernhardova, H.; Vavra, O.; Novakova, V.; Damborsky, J.; Bednar, D.; Prokop, Z.; Marek, M. "Molecular trick to reverse SN2 step in a haloalkane dehalogenase", Chem Catalysis, 2026. (The complete citation will be updated after its publication.)

Keywords

molecular dynamcis (MDs), Rate and equilibrium constants, transient kinetics, Biocatalysis, adaptive steered molecular dynamics (ASMDs), haloalkane dehalogenase, enzyme access tunnels

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
0
Average
Average
Average