Powered by OpenAIRE graph
Found an issue? Give us feedback
ZENODOarrow_drop_down
ZENODO
Presentation . 2025
License: CC BY
Data sources: Datacite
ZENODO
Presentation . 2025
License: CC BY
Data sources: Datacite
versions View all 2 versions
addClaim

Accelerating Ontology Curation with Agentic AI and GitHub

Authors: Mungall, Christopher;

Accelerating Ontology Curation with Agentic AI and GitHub

Abstract

Overview Artificial Intelligence (AI) technology is having a tremendous impact on science and society. This can be readily observed in fields such as software engineering, where developers are increasingly using AI tools and even ‘vibe coding’ entire projects. However, much of this impact has yet to filter down to curation and ontology development. Many ontology developers report that they are either distrustful of AI, or they don’t know where to start. Additionally, ontology developers may think that parts of their workflow are too complex to use in AI. In fact, AI is particularly well suited to many complex aspects of ontology development, and if used correctly, can be deployed with high reliability, while giving the human experts full control over tasks. Some ontologies such as Mondo, Uberon, and the GO have already successfully incorporated ontology agents into their GitHub-based workflows. In this tutorial, we will give a practical hands-on guide to ontology developers showing how to use the latest powerful agent-based AI to support and accelerate their work. At the end of the tutorial, participants will be able to use an AI coding agent as a part of their day-to-day workflow. What Participants Will Learn Core concepts underlying agentic AI How to use an AI coding agent for tasks including Simple mechanical edits to individual terms Adding terms or batches of terms to an ontology Performing complex updates and refactorings that touch multiple terms FormatA 3-hour tutorial with a mix of short lectures and hands-on walkthroughs. Attendees should have a basic familiarity with ontologies and GitHub. Target AudienceOntology developers, maintainers, and biomedical curators interested in accelerating workflows using agentic AI Materials Slides: ICBO Agent Tutorial 2025 Repo: https://github.com/ai4curation/icbo-ai-tutorial Blog: https://monarchinit.medium.com/ai-for-curation-workshop-at-icbo-2025-15007c14d34b Recording: https://youtu.be/_9Re39yB7EE?si=1WaUJiKL1U1OssGT

Keywords

Biological Ontologies, Artificial Intelligence

  • BIP!
    Impact byBIP!
    selected citations
    These citations are derived from selected sources.
    This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    0
    popularity
    This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
    Average
    influence
    This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    Average
    impulse
    This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
    Average
Powered by OpenAIRE graph
Found an issue? Give us feedback
selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
0
Average
Average
Average
Related to Research communities
Upload OA version
Are you the author of this publication? Upload your Open Access version to Zenodo!
It’s fast and easy, just two clicks!