This repository contains data files and scripts used for the publication "On the ancestry and evolution of the extinct dire wolf". This includes: Supplementary_Tables: A single file with all supplementary tables (as tabs) referenced in the manuscript:S1: Sequencing library statistics for all ancient samples.S2: Reference assembly accessions used in studyS3: Alignment statistics for all ancient samplesS4: Iterative mapping and polishing statistics for paleogenome reconstructionS5: Gene annotation information for paleogenome reconstructionS6: Allele sharing statistics for residual reference bias assessmentS7: Mash distance metrics for genetic distanceS8: Short read dataset accessions used in studyS9: Mitochondrial genome accessions used in studyS10: Age estimates for nodes in phylogenetic treeS11: Summary of admixture methods and models dw_samps.hom.uniq.DP5.GQ10.VAF2.long-form: List of high confidence homozygous variants supported from both dire wolf specimens. mAenDir1.fa.gz: genome assembly for dire wolf generated using iterative mapping via Pilon.