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rna-editing1/lodei: lodei v1.1.0

integration_instructionsResearch softwarekeyboard_double_arrow_right Software 26 Sep 2025Publisher:Zenodo
Authors: rna-editing1;
Code repository: https://github.com/rna-editing1/lodei/tree/lodei_v1.1.0

doi: 10.5281/zenodo.17206213 , 10.5281/zenodo.13838679 , 10.5281/zenodo.18607757 , 10.5281/zenodo.17206202 , 10.5281/zenodo.17922166

rna-editing1/lodei: lodei v1.1.0

Abstract

LoDEI v1.1.0 release notes: lodei find now supports the analysis of paired-end reads out-of-the box. added support for ISR and ISF library types (see https://salmon.readthedocs.io/en/latest/library_type.html for description of library types) lodei find creates (if needed) missing .bai files for the provided input .bam files Added QC plot lodei plotwindowcounts displaying the number of windows for a differential editing signals versus the differential editing signal for a better understanding of the underlying data. Added metagene plot lodei plotmetagene visualizing the number of detected, significant windows or the summed signal strength of significant windows for a given set of genomic locations.

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
0
Average
Average
Average