v.0.4.6 I'm pleased to announce that stackr parallel mode now works with Windows! Nothing to install, just need to choose the number of CPU, the rest is done automatically. haplo2colony is deprecated. Use the new function called write_colony! write_colony: works similarly to the deprecated function haplo2colony,* with the major advantage that it's no longer restricted to STACKS haplotypes file. * The function is using the `tidy_genomic_data` module to import files. So you can choose one of the 10 input file formats supported by `stackr`! * other benefits also include the possibility to efficiently test MAF, snp.ld, haplotypes/snp approach, whitelist of markes, blacklist of individuals, blacklist of genotypes, etc. with the buit-it arguments. * the function only **keeps markers in common** between populations/groups and **is removing monomorphic markers**. * **Note:** there are several *defaults* in the function and it's a complicated file format, so make sure to read the function documentation, please, and `COLONY` manual.