Introduction Data Review and Archive Data review and archiving can be a time-consuming process, especially when done manually. This review report aims to help facilitate both activities. It automates the archiving of datasets, including Darwin Core archives, and is a citable backup of a version of the dataset. Additionally, an automatic review of species interaction claims made in the dataset is generated and registered with Global Biotic Interactions (J. H. Poelen, Simons, and Mungall 2014). This review includes summary statistics about, and observations about, the dataset under review : Pinnegar, J.K. (2014). DAPSTOM - An Integrated Database & Portal for Fish Stomach Records. Version 4.7. Centre for Environment, Fisheries & Aquaculture Science, Lowestoft, UK. February 2014, 39pp. https://zenodo.org/records/258222/files/millerse/Dapstrom-integrated-database-and-portal-for-fish-stomach-records-v1.0.zip 2026-01-31T09:39:01.859Z hash://md5/569ae0feab6ee2248e67be6f5ca94786 For additional metadata related to this dataset, please visit https://github.com/millerse/Dapstrom-integrated-database-and-portal-for-fish-stomach-records and inspect associated metadata files including, but not limited to, README.md, eml.xml, and/or globi.json. Methods The review is performed through programmatic scripts that leverage tools like Preston (Elliott et al. 2025), Elton (Kuhn, Poelen, and Leinweber 2025), Nomer (Salim and Poelen 2025), globinizer (J. Poelen, Seltmann, and Mietchen 2024) combined with third-party tools like grep, mlr, tail and head. Tools used in this review process tool name version preston 0.11.1 elton 0.16.4 nomer 0.5.17 globinizer 0.4.0 mlr 6.0.0 jq 1.6 yq 4.25.3 pandoc 3.1.6.1 duckdb 1.3.1 mapserver 7.6.4 The review process can be described in the form of the script below 1. # get versioned copy of the dataset (size approx. 32.6MiB) under review elton pull millerse/Dapstrom-integrated-database-and-portal-for-fish-stomach-records # generate review notes elton review millerse/Dapstrom-integrated-database-and-portal-for-fish-stomach-records\ > review.tsv # export indexed interaction records elton interactions millerse/Dapstrom-integrated-database-and-portal-for-fish-stomach-records\ > interactions.tsv # export names and align them with the Catalogue of Life using Nomer elton names millerse/Dapstrom-integrated-database-and-portal-for-fish-stomach-records\ | nomer append col\ > name-alignment.tsv or visually, in a process diagram. Review Process Overview You can find a copy of the full review script at check-data.sh. See also GitHub and Codeberg. Results In the following sections, the results of the review are summarized 2. Then, links to the detailed review reports are provided. Files The following files are produced in this review: filename description biblio.bib list of bibliographic reference of this review check-dataset.sh data review workflow/process as expressed in a bash script data.zip a versioned archive of the data under review HEAD the digital signature of the data under review index.docx review in MS Word format index.html review in HTML format index.md review in Pandoc markdown format index.pdf review in PDF format indexed-citations.csv.gz list of distinct reference citations for reviewed species interaction claims in gzipped comma-separated values file format indexed-citations.html.gz list of distinct reference citations for reviewed species interactions claims in gzipped html file format indexed-citations.tsv.gz list of distinct reference citations for reviewed species interaction claims in gzipped tab-separated values format indexed-interactions-col-family-col-family.svg network diagram showing the taxon family to taxon family interaction claims in the dataset under review as interpreted by the Catalogue of Life via Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) indexed-interactions-col-kingdom-col-kingdom.svg network diagram showing the taxon kingdom to taxon kingom interaction claims in the dataset under review as interpreted by the Catalogue of Life via Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) indexed-interactions.csv.gz species interaction claims indexed from the dataset under review in gzipped comma-separated values format indexed-interactions.html.gz species interaction claims indexed from the dataset under review in gzipped html format indexed-interactions.tsv.gz species interaction claims indexed from the dataset under review in gzipped tab-separated values format indexed-interactions.parquet species interaction claims indexed from the dataset under review in Apache Parquet format indexed-interactions.png species interaction claims indexed from the dataset under review plotted on a map indexed-interactions.gpkg species interaction claims indexed from the dataset under review in GeoPackage format indexed-interactions-h3.gpkg geospatially clustered h3 species interaction claims indexed from the dataset under review in GeoPackage format indexed-interactions-sample.csv list of species interaction claims indexed from the dataset under review in gzipped comma-separated values format indexed-interactions-sample.html first 500 species interaction claims indexed from the dataset under review in html format indexed-interactions-sample.tsv first 500 species interaction claims indexed from the dataset under review in tab-separated values format indexed-names.csv.gz taxonomic names indexed from the dataset under review in gzipped comma-separated values format indexed-names.html.gz taxonomic names found in the dataset under review in gzipped html format indexed-names.tsv.gz taxonomic names found in the dataset under review in gzipped tab-separated values format indexed-names.parquet taxonomic names found in the dataset under review in Apache Parquet format indexed-names-resolved-col.csv.gz taxonomic names found in the dataset under review aligned with the Catalogue of Life as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped comma-separated values format indexed-names-resolved-col.html.gz taxonomic names found in the dataset under review aligned with the Catalogue of Life as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped html format indexed-names-resolved-col.tsv.gz taxonomic names found in the dataset under review aligned with the Catalogue of Life as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped tab-separated values format indexed-names-resolved-col.parquet taxonomic names found in the dataset under review aligned with the Catalogue of Life as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in Apache Parquet format indexed-names-resolved-discoverlife.csv.gz taxonomic names found in the dataset under review aligned with Discover Life bee species checklist as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped comma-separated values format indexed-names-resolved-discoverlife.html.gz taxonomic names found in the dataset under review aligned with Discover Life bee species checklist as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped html format indexed-names-resolved-discoverlife.tsv.gz taxonomic names found in the dataset under review aligned with Discover Life bee species checklist as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped tab-separated values format indexed-names-resolved-discoverlife.parquet taxonomic names found in the dataset under review aligned with Discover Life bee species checklist as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in Apache Parquet format indexed-names-resolved-gbif.csv.gz taxonomic names found in the dataset under review aligned with GBIF Backbone Taxonomy as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped comma-separated values format indexed-names-resolved-gbif.html.gz taxonomic names found in the dataset under review aligned with GBIF Backbone Taxonomy as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped html format indexed-names-resolved-gbif.tsv.gz taxonomic names found in the dataset under review aligned with GBIF Backbone Taxonomy as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped tab-separated values format indexed-names-resolved-gbif.parquet taxonomic names found in the dataset under review aligned with GBIF Backbone Taxonomy as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in Apache Parquet format indexed-names-resolved-itis.csv.gz taxonomic names found in the dataset under review aligned with Integrated Taxonomic Information System (ITIS) as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped comma-separated values format indexed-names-resolved-itis.html.gz taxonomic names found in the dataset under review aligned with Integrated Taxonomic Information System (ITIS) as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped html format indexed-names-resolved-itis.tsv.gz taxonomic names found in the dataset under review aligned with Integrated Taxonomic Information System (ITIS) as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped tab-separated values format indexed-names-resolved-itis.parquet taxonomic names found in the dataset under review aligned with Integrated Taxonomic Information System (ITIS) as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in Apache Parquet format indexed-names-resolved-mdd.csv.gz taxonomic names found in the dataset under review aligned with the Mammal Diversity Database as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped comma-separated values format indexed-names-resolved-mdd.html.gz taxonomic names found in the dataset under review aligned with Mammal Diversity Database as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped html format indexed-names-resolved-mdd.tsv.gz taxonomic names found in the dataset under review aligned with Mammal Diversity Database as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped tab-separated values format indexed-names-resolved-mdd.parquet taxonomic names found in the dataset under review aligned with Mammal Diversity Database as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in Apache Parquet format indexed-names-resolved-ncbi.csv.gz taxonomic names found in the dataset under review aligned with the NCBI Taxonomy as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped comma-separated values format indexed-names-resolved-ncbi.html.gz taxonomic names found in the dataset under review aligned with the NCBI Taxonomy as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped html format indexed-names-resolved-ncbi.tsv.gz taxonomic names found in the dataset under review aligned with the NCBI Taxonomy as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped tab-separated values format indexed-names-resolved-ncbi.parquet taxonomic names found in the dataset under review aligned with the NCBI Taxonomy as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in Apache Parquet format indexed-names-resolved-pbdb.csv.gz taxonomic names found in the dataset under review aligned with the Paleobiology Database as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped comma-separated values format indexed-names-resolved-pbdb.html.gz taxonomic names found in the dataset under review aligned with Paleobiology Database as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped html format indexed-names-resolved-pbdb.tsv.gz taxonomic names found in the dataset under review aligned with Paleobiology Database as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped tab-separated values format indexed-names-resolved-pbdb.parquet taxonomic names found in the dataset under review aligned with Paleobiology Database as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in Apache Parquet format indexed-names-resolved-tpt.csv.gz taxonomic names found in the dataset under review aligned with the Terrestrial Parasite Tracker (TPT) Taxonomic Resource as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped comma-separated values format indexed-names-resolved-tpt.html.gz taxonomic names found in the dataset under review aligned with the Terrestrial Parasite Tracker (TPT) Taxonomic Resource as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped html format indexed-names-resolved-tpt.tsv.gz taxonomic names found in the dataset under review aligned with the Terrestrial Parasite Tracker (TPT) Taxonomic Resource as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped tab-separated values format indexed-names-resolved-tpt.parquet taxonomic names found in the dataset under review aligned with the Terrestrial Parasite Tracker (TPT) Taxonomic Resource as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in Apache Parquet format indexed-names-resolved-wfo.csv.gz taxonomic names found in the dataset under review aligned with the World of Flora Online as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped comma-separated values format indexed-names-resolved-wfo.html.gz taxonomic names found in the dataset under review aligned with the World of Flora Online as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped html format indexed-names-resolved-wfo.tsv.gz taxonomic names found in the dataset under review aligned with the World of Flora Online as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped tab-separated values format indexed-names-resolved-wfo.parquet taxonomic names found in the dataset under review aligned with the World of Flora Online as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in Apache Parquet format indexed-names-resolved-worms.csv.gz taxonomic names found in the dataset under review aligned with the World Register of Marine Species (WoRMS) as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped comma-separated values format indexed-names-resolved-worms.html.gz taxonomic names found in the dataset under review aligned with the World Register of Marine Species (WoRMS) as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped html format indexed-names-resolved-worms.tsv.gz taxonomic names found in the dataset under review aligned with the World Register of Marine Species (WoRMS) as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped tab-separated values format indexed-names-resolved-worms.parquet taxonomic names found in the dataset under review aligned with the World Register of Marine Species (WoRMS) as accessed through the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in Apache Parquet format indexed-names-sample.csv first 500 taxonomic names found in the dataset under review in comma-separated values format indexed-names-sample.html first 500 taxonomic names found in the dataset under review in html format indexed-names-sample.tsv first 500 taxonomic names found in the dataset under review in tab-separated values format interaction.svg diagram summarizing the data model used to index species interaction claims nanopub-sample.trig first 500 species interaction claims as expressed in the nanopub format (Kuhn and Dumontier 2014) nanopub.trig.gz species interaction claims as expressed in the nanopub format (Kuhn and Dumontier 2014) process.svg diagram summarizing the data review processing workflow prov.nq origin of the dataset under review as expressed in rdf/nquads review.csv.gz review notes associated with the dataset under review in gzipped comma-separated values format review.html.gz review notes associated with the dataset under review in gzipped html format review.tsv.gz review notes associated with the dataset under review in gzipped tab-separated values format review-sample.csv first 500 review notes associated with the dataset under review in comma-separated values format review-sample.html first 500 review notes associated with the dataset under review in html format review-sample.tsv first 500 review notes associated with the dataset under review in tab-separated values format review.svg a review badge generated as part of the dataset review process zenodo.json metadata of this review expressed in Zenodo record metadata Archived Dataset Note that data.zip file in this archive contains the complete, unmodified archived dataset under review. Biotic Interactions Biotic Interaction Data Model In this review, biotic interactions (or biotic associations) are modeled as a primary (aka subject, source) organism interacting with an associate (aka object, target) organism. The dataset under review classified the primary/associate organisms with specific taxa. The primary and associate organisms The kind of interaction is documented as an interaction type. The dataset under review, named millerse/Dapstrom-integrated-database-and-portal-for-fish-stomach-records, has fingerprint hash://md5/569ae0feab6ee2248e67be6f5ca94786, is 32.6MiB in size and contains 225,564 interactions with 1 unique type of association (e.g., eats) between 187 primary taxa (e.g., GADUS MORHUA) and 1,268 associated taxa (e.g., EMPTY). An exhaustive list of indexed interaction claims can be found in gzipped csv, tsv, geopackage and parquet archives. To facilitate discovery, a preview of claims available in the gzipped html page at indexed-interactions.html.gz are shown below. The exhaustive list was used to create the following data summaries below. Sample of Indexed Interaction Claims sourceTaxonName interactionTypeName targetTaxonName referenceCitation SCOMBER SCOMBRUS eats ACARTIA CLAUSI Pinnegar, J.K. (2014). DAPSTOM - An Integrated Database & Portal for Fish Stomach Records. Version 4.7. Centre for Environment, Fisheries & Aquaculture Science, Lowestoft, UK. February 2014, 39pp. Accessed at https://www.cefas.co.uk/umbraco/CefasPlugins/DapstomSurface/Download?searchType=predator&species=MAC&years=2011&years=2010&years=2006&years=2005&years=2004&years=1991&years=1987&years=1986&years=1979&years=1978&years=1977&years=1976&years=1974&years=1972&years=1965&years=1956&years=1919&years=1917&years=1907&years=1906&years=1902&years=1901&years=1899&areas=VIIIb&areas=Va&areas=VIIj&areas=VIa&areas=VIIIc&areas=XIVb&areas=VIIg&areas=VIIh&areas=VIIa&areas=IIa&areas=XIVa&areas=VIIId&areas=VIIe&areas=VIIf&areas=IVa&areas=IVc&areas=VIIIa&areas=IVb&minlength=0&maxlength=1000&nullLengths=true on 03 Feb 2026. SCOMBER SCOMBRUS eats ACARTIA CLAUSI Pinnegar, J.K. (2014). DAPSTOM - An Integrated Database & Portal for Fish Stomach Records. Version 4.7. Centre for Environment, Fisheries & Aquaculture Science, Lowestoft, UK. February 2014, 39pp. Accessed at https://www.cefas.co.uk/umbraco/CefasPlugins/DapstomSurface/Download?searchType=predator&species=MAC&years=2011&years=2010&years=2006&years=2005&years=2004&years=1991&years=1987&years=1986&years=1979&years=1978&years=1977&years=1976&years=1974&years=1972&years=1965&years=1956&years=1919&years=1917&years=1907&years=1906&years=1902&years=1901&years=1899&areas=VIIIb&areas=Va&areas=VIIj&areas=VIa&areas=VIIIc&areas=XIVb&areas=VIIg&areas=VIIh&areas=VIIa&areas=IIa&areas=XIVa&areas=VIIId&areas=VIIe&areas=VIIf&areas=IVa&areas=IVc&areas=VIIIa&areas=IVb&minlength=0&maxlength=1000&nullLengths=true on 03 Feb 2026. SCOMBER SCOMBRUS eats ACARTIA CLAUSI Pinnegar, J.K. (2014). DAPSTOM - An Integrated Database & Portal for Fish Stomach Records. Version 4.7. Centre for Environment, Fisheries & Aquaculture Science, Lowestoft, UK. February 2014, 39pp. Accessed at https://www.cefas.co.uk/umbraco/CefasPlugins/DapstomSurface/Download?searchType=predator&species=MAC&years=2011&years=2010&years=2006&years=2005&years=2004&years=1991&years=1987&years=1986&years=1979&years=1978&years=1977&years=1976&years=1974&years=1972&years=1965&years=1956&years=1919&years=1917&years=1907&years=1906&years=1902&years=1901&years=1899&areas=VIIIb&areas=Va&areas=VIIj&areas=VIa&areas=VIIIc&areas=XIVb&areas=VIIg&areas=VIIh&areas=VIIa&areas=IIa&areas=XIVa&areas=VIIId&areas=VIIe&areas=VIIf&areas=IVa&areas=IVc&areas=VIIIa&areas=IVb&minlength=0&maxlength=1000&nullLengths=true on 03 Feb 2026. SCOMBER SCOMBRUS eats ACARTIA CLAUSI Pinnegar, J.K. (2014). DAPSTOM - An Integrated Database & Portal for Fish Stomach Records. Version 4.7. Centre for Environment, Fisheries & Aquaculture Science, Lowestoft, UK. February 2014, 39pp. Accessed at https://www.cefas.co.uk/umbraco/CefasPlugins/DapstomSurface/Download?searchType=predator&species=MAC&years=2011&years=2010&years=2006&years=2005&years=2004&years=1991&years=1987&years=1986&years=1979&years=1978&years=1977&years=1976&years=1974&years=1972&years=1965&years=1956&years=1919&years=1917&years=1907&years=1906&years=1902&years=1901&years=1899&areas=VIIIb&areas=Va&areas=VIIj&areas=VIa&areas=VIIIc&areas=XIVb&areas=VIIg&areas=VIIh&areas=VIIa&areas=IIa&areas=XIVa&areas=VIIId&areas=VIIe&areas=VIIf&areas=IVa&areas=IVc&areas=VIIIa&areas=IVb&minlength=0&maxlength=1000&nullLengths=true on 03 Feb 2026. Most Frequently Mentioned Interaction Types (up to 20 most frequent) interactionTypeName count eats 225564 Most Frequently Mentioned Primary Taxa (up to 20 most frequent) sourceTaxonName count GADUS MORHUA 67884 MERLANGIUS MERLANGUS 47017 MELANOGRAMMUS AEGLEFINUS 19823 PLEURONECTES PLATESSA 12916 SCOMBER SCOMBRUS 10489 CLUPEA HARENGUS 8508 EUTRIGLA GURNARDUS 8327 LIMANDA LIMANDA 4837 SPRATTUS SPRATTUS 4651 LEPIDORHOMBUS WHIFFIAGONIS 4169 ECHIICHTHYS VIPERA 2632 SCYLIORHINUS CANICULA 2617 MERLUCCIUS MERLUCCIUS 2305 POLLACHIUS VIRENS 2146 MICROMESISTIUS POUTASSOU 1583 AMMODYTES SPP 1389 TRISOPTERUS MINUTUS 1270 LOPHIUS PISCATORIUS 1202 PLATICHTHYS FLESUS 1154 Most Frequently Mentioned Associate Taxa (up to 20 most frequent) targetTaxonName count EMPTY 35805 AMMODYTES SPP 11880 OSTEICHTHYS - TELEOSTEI 11751 PSEUDOCALANUS ELONGATUS (FEMALE) 7076 DIGESTED REMAINS 6650 POLYCHAETA 6279 THYSANOESSA INERMIS 5748 CRUSTACEA 5627 COPEPODA-CALANOIDA 4629 COPEPODA (COPEPODITE 1-3) 4373 EUPHAUSIIDAE 4230 AMPHIPODA 3365 CRANGONIDAE 3337 CALANUS SPP 3174 OPHIURIDA (ORDER) 3138 COPEPODA (COPEPODITE 4-5) 2499 CRANGON CRANGON 2393 BRACHYURA-CANCRIDEA 2325 TEMORA SPP (MALE) 2309 Most Frequent Interactions between Primary and Associate Taxa (up to 20 most frequent) sourceTaxonName interactionTypeName targetTaxonName count MERLANGIUS MERLANGUS eats EMPTY 9732 GADUS MORHUA eats EMPTY 6516 GADUS MORHUA eats THYSANOESSA INERMIS 5483 GADUS MORHUA eats OSTEICHTHYS - TELEOSTEI 5101 MERLANGIUS MERLANGUS eats PSEUDOCALANUS ELONGATUS (FEMALE) 3908 MELANOGRAMMUS AEGLEFINUS eats AMMODYTES SPP 3741 MERLANGIUS MERLANGUS eats COPEPODA (COPEPODITE 1-3) 3196 GADUS MORHUA eats PSEUDOCALANUS ELONGATUS (FEMALE) 3168 MERLANGIUS MERLANGUS eats AMMODYTES SPP 2832 MERLANGIUS MERLANGUS eats OSTEICHTHYS - TELEOSTEI 2696 GADUS MORHUA eats AMMODYTES SPP 2617 PLEURONECTES PLATESSA eats EMPTY 2385 EUTRIGLA GURNARDUS eats EMPTY 2309 MELANOGRAMMUS AEGLEFINUS eats OPHIURIDA (ORDER) 2148 MERLANGIUS MERLANGUS eats COPEPODA (COPEPODITE 4-5) 1899 MERLANGIUS MERLANGUS eats TEMORA SPP (FEMALE) 1795 LEPIDORHOMBUS WHIFFIAGONIS eats EMPTY 1735 MERLANGIUS MERLANGUS eats TEMORA SPP (MALE) 1672 GADUS MORHUA eats NEPHROPS NORVEGICUS 1624 Interaction Networks The figures below provide a graph view on the dataset under review. The first shows a summary network on the kingdom level, and the second shows how interactions on the family level. It is important to note that both network graphs were first aligned taxonomically using the Catalogue of Life. Please refer to the original (or verbatim) taxonomic names for a more original view on the interaction data. Interactions on taxonomic kingdom rank as interpreted by the Catalogue of Life download svg Interactions on the taxonomic family rank as interpreted by the Catalogue of Life. download svg You can download the indexed dataset under review at indexed-interactions.csv.gz. A tab-separated file can be found at indexed-interactions.tsv.gz Geospatial Distribution If geospatial information was extracted from the dataset under review, the map below will show their distribution. Hexagonal grid cells indicate that interactions claims are available for selected geospatial area: light yellow means relatively fewer claims, dark green relatively more claims. Associated data can be found in the geopackage files at indexed-interactions.gpkg for point data and indexed-interactions-h3.gpkg for data clustered in geospatial h3 hexagonals. Learn more about the structure of this download at GloBI website, by opening a GitHub issue, or by sending an email. Another way to discover the dataset under review is by searching for it on the GloBI website. Taxonomic Alignment As part of the review, all names are aligned against various name catalogs (e.g., col, ncbi, discoverlife, gbif, itis, wfo, mdd, tpt, pbdb, and worms). These alignments can help review name usage or aid in selecting of a suitable taxonomic name resource. Sample of Name Alignments providedName relationName resolvedCatalogName resolvedName Abietinaria abietina HAS_ACCEPTED_NAME col Abietinaria abietina Abludomelita obtusata HAS_ACCEPTED_NAME col Abludomelita obtusata Abra alba HAS_ACCEPTED_NAME col Abra alba Abramis brama HAS_ACCEPTED_NAME col Abramis brama Distribution of Taxonomic Ranks of Aligned Names by Catalog. Names that were not aligned with a catalog are counted as NAs. So, the total number of unaligned names for a catalog will be listed in their NA row. resolvedCatalogName resolvedRank count col NA 168 col class 24 col family 119 col genus 174 col gigaclass 1 col infraorder 2 col kingdom 1 col order 17 col other 1 col parvphylum 1 col phylum 11 col species 765 col subclass 4 col subfamily 2 col subgenus 10 col suborder 1 col subspecies 18 col superfamily 1 col superorder 1 discoverlife NA 1291 gbif NA 117 gbif class 25 gbif family 124 gbif genus 201 gbif kingdom 1 gbif order 16 gbif phylum 12 gbif species 813 gbif subspecies 6 itis NA 122 itis class 23 itis division 1 itis family 120 itis form 1 itis genus 180 itis infrakingdom 1 itis infraorder 2 itis infraphylum 1 itis kingdom 1 itis order 18 itis phylum 9 itis species 789 itis subclass 7 itis subfamily 4 itis suborder 4 itis subphylum 2 itis subspecies 2 itis superclass 1 itis superfamily 1 itis superorder 5 mdd NA 1290 ncbi NA 256 ncbi clade 1 ncbi class 24 ncbi cohort 1 ncbi family 120 ncbi genus 174 ncbi infraorder 3 ncbi order 17 ncbi phylum 11 ncbi series 1 ncbi species 673 ncbi subclass 5 ncbi subfamily 3 ncbi subgenus 2 ncbi suborder 3 ncbi subphylum 1 ncbi superclass 1 ncbi superorder 3 pbdb NA 845 pbdb class 26 pbdb family 109 pbdb genus 101 pbdb infraclass 1 pbdb infraorder 2 pbdb kingdom 1 pbdb order 19 pbdb phylum 11 pbdb species 157 pbdb subclass 5 pbdb subfamily 7 pbdb suborder 4 pbdb subspecies 1 pbdb superclass 2 pbdb superfamily 1 pbdb superorder 3 pbdb superphylum 1 pbdb unranked clade 7 tpt NA 1282 tpt species 8 wfo NA 1273 wfo genus 16 wfo species 1 worms NA 167 worms class 24 worms family 113 worms forma 1 worms genus 164 worms gigaclass 1 worms infraclass 1 worms infraorder 3 worms infraphylum 2 worms kingdom 1 worms order 16 worms parvphylum 1 worms phylum 10 worms phylum (division) 1 worms species 769 worms subclass 4 worms subfamily 1 worms suborder 3 worms subphylum 2 worms subspecies 7 worms superfamily 1 worms superorder 3 Name relationship types per catalog. Name relationship type "NONE" means that a name was not recognized by the associated catalog. "SAME_AS" indicates either a "HAS_ACCEPTED_NAME" or "SYNONYM_OF" name relationship type. We recognize that "SYNONYM_OF" encompasses many types of nomenclatural synonymies resolvedCatalogName relationName count col HAS_ACCEPTED_NAME 1138 col SYNONYM_OF 282 col NONE 177 discoverlife NONE 1356 gbif HAS_ACCEPTED_NAME 1235 gbif SYNONYM_OF 331 gbif NONE 125 itis HAS_ACCEPTED_NAME 1154 itis SYNONYM_OF 103 itis NONE 129 mdd NONE 1350 mdd HAS_ACCEPTED_NAME 1 ncbi SAME_AS 1039 ncbi NONE 267 ncbi SYNONYM_OF 67 pbdb NONE 872 pbdb HAS_ACCEPTED_NAME 463 pbdb SYNONYM_OF 74 tpt NONE 1343 tpt SYNONYM_OF 1 tpt HAS_ACCEPTED_NAME 7 wfo NONE 1332 wfo SYNONYM_OF 10 wfo HAS_ACCEPTED_NAME 7 wfo HAS_UNCHECKED_NAME 2 worms HAS_ACCEPTED_NAME 1049 worms SYNONYM_OF 201 worms NONE 173 List of Available Name Alignment Reports catalog name alignment results col associated names alignments report in gzipped html, csv, and tsv) ncbi associated names alignments report in gzipped html, csv, and tsv) discoverlife associated names alignments report in gzipped html, csv, and tsv) gbif associated names alignments report in gzipped html, csv, and tsv) itis associated names alignments report in gzipped html, csv, and tsv) wfo associated names alignments report in gzipped html, csv, and tsv) mdd associated names alignments report in gzipped html, csv, and tsv) tpt associated names alignments report in gzipped html, csv, and tsv) pbdb associated names alignments report in gzipped html, csv, and tsv) worms associated names alignments report in gzipped html, csv, and tsv) Additional Reviews Elton, Nomer, and other tools may have difficulties interpreting existing species interaction datasets. Or, they may misbehave, or otherwise show unexpected behavior. As part of the review process, detailed review notes are kept that document possibly misbehaving, or confused, review bots. An sample of review notes associated with this review can be found below. First few lines in the review notes. reviewDate reviewCommentType reviewComment 2026-02-03T03:11:40Z summary https://zenodo.org/records/258222/files/millerse/Dapstrom-integrated-database-and-portal-for-fish-stomach-records-v1.0.zip 2026-02-03T03:11:40Z summary 225564 interaction(s) 2026-02-03T03:11:40Z summary 0 note(s) 2026-02-03T03:11:40Z summary 225564 info(s) In addition, you can find the most frequently occurring notes in the table below. : Most frequently occurring review notes, if any. For additional information on review notes, please have a look at the first 500 Review Notes in html format or the download full gzipped csv or tsv archives. GloBI Review Badge As part of the review, a review badge is generated. This review badge can be included in webpages to indicate the review status of the dataset under review. Picture of a GloBI Review Badge 3 Note that if the badge is green, no review notes were generated. If the badge is yellow, the review bots may need some help with interpreting the species interaction data. GloBI Index Badge If the dataset under review has been registered with GloBI, and has been succesfully indexed by GloBI, the GloBI Index Status Badge will turn green. This means that the dataset under review was indexed by GloBI and is available through GloBI services and derived data products. Picture of a GloBI Index Badge 4 If you'd like to keep track of reviews or index status of the dataset under review, please visit GloBI's dataset index 5 for badge examples. Discussion This review and archive provides a means of creating citable versions of datasets that change frequently. This may be useful for dataset managers, including natural history collection data managers, as a backup archive of a shared Darwin Core archive. It also serves as a means of creating a trackable citation for the dataset in an automated way, while also including some information about the contents of the dataset. This review aims to provide a perspective on the dataset to aid in understanding of species interaction claims discovered. However, it is important to note that this review does not assess the quality of the dataset. Instead, it serves as an indication of the open-ness6 and FAIRness (Wilkinson et al. 2016; Trekels et al. 2023) of the dataset: to perform this review, the data was likely openly available, Findable, Accessible, Interoperable and Reusable. The current Open-FAIR assessment is qualitative, and a more quantitative approach can be implemented with specified measurement units. This report also showcases the reuse of machine-actionable (meta)data, something highly recommended by the FAIR Data Principles (Wilkinson et al. 2016). Making (meta)data machine-actionable enables more precise procesing by computers, enabling even naive review bots like Nomer and Elton to interpret the data effectively. This capability is crucial for not just automating the generation of reports, but also for facilitating seamless data exchanges, promoting interoperability. Acknowledgements We thank the many humans that created us and those who created and maintained the data, software and other intellectual resources that were used for producing this review. In addition, we are grateful for the natural resources providing the basis for these human and bot activities. Also, thanks to https://github.com/zygoballus for helping improve the layout of the review tables. Author contributions Nomer was responsible for name alignments. Elton carried out dataset extraction, and generated the review notes. Preston tracked, versioned, and packaged, the dataset under review. References Elliott, Michael, Jorrit Poelen, Icaro Alzuru, Emilio Berti, and partha04patel. 2025. "Bio-Guoda/Preston: 0.10.5." Zenodo. https://doi.org/10.5281/zenodo.14662206. ICZN. 1999. "International Code of Zoological Nomenclature." The International Trust for Zoological Nomenclature, London, UK. https://www.iczn.org/the-code/the-code-online/. Kuhn, Tobias, and Michel Dumontier. 2014. "Trusty URIs: Verifiable, Immutable, and Permanent Digital Artifacts for Linked Data." In The Semantic Web: Trends and Challenges, edited by Valentina Presutti, Claudia d'Amato, Fabien Gandon, Mathieu d'Aquin, Steffen Staab, and Anna Tordai, 395–410. Cham: Springer International Publishing. Kuhn, Tobias, Jorrit Poelen, and Katrin Leinweber. 2025. "Globalbioticinteractions/Elton: 0.15.1." Zenodo. https://doi.org/10.5281/zenodo.14927734. Poelen, Jorrit H. (ed.). 2024. "Nomer Corpus of Taxonomic Resources Hash://Sha256/ B60c0d25a16ae77b24305782017b1a270b79b5d1746f832650 F2027ba536e276 Hash://Md5/17f1363a277ee0e4ecaf1b91c665e47e." Zenodo. https://doi.org/10.5281/zenodo.12695629. Poelen, Jorrit H., James D. Simons, and Chris J. Mungall. 2014. "Global Biotic Interactions: An Open Infrastructure to Share and Analyze Species-Interaction Datasets." Ecological Informatics 24 (November): 148–59. https://doi.org/10.1016/j.ecoinf.2014.08.005. Poelen, Jorrit, Katja Seltmann, and Daniel Mietchen. 2024. "Globalbioticinteractions/Globinizer: 0.4.0." Zenodo. https://doi.org/10.5281/zenodo.10647565. Salim, José Augusto, and Jorrit Poelen. 2025. "Globalbioticinteractions/Nomer: 0.5.15." Zenodo. https://doi.org/10.5281/zenodo.14893840. Trekels, Maarten, Debora Pignatari Drucker, José Augusto Salim, Jeff Ollerton, Jorrit Poelen, Filipi Miranda Soares, Max Rünzel, Muo Kasina, Quentin Groom, and Mariano Devoto. 2023. "WorldFAIR Project (D10.1) Agriculture-related pollinator data standards use cases report." Zenodo. https://doi.org/10.5281/zenodo.8176978. Wilkinson, Mark D., Michel Dumontier, IJsbrand Jan Aalbersberg, Gabrielle Appleton, Myles Axton, Arie Baak, Niklas Blomberg, et al. 2016. "The FAIR Guiding Principles for Scientific Data Management and Stewardship." Scientific Data 3 (1). https://doi.org/10.1038/sdata.2016.18. Note that you have to first get the data (e.g., via elton pull millerse/Dapstrom-integrated-database-and-portal-for-fish-stomach-records) before being able to generate reviews (e.g., elton review millerse/Dapstrom-integrated-database-and-portal-for-fish-stomach-records), extract interaction claims (e.g., elton interactions millerse/Dapstrom-integrated-database-and-portal-for-fish-stomach-records), or list taxonomic names (e.g., elton names millerse/Dapstrom-integrated-database-and-portal-for-fish-stomach-records)↩︎ Disclaimer: The results in this review should be considered friendly, yet naive, notes from an unsophisticated robot. Please keep that in mind when considering the review results.↩︎ Up-to-date status of the GloBI Review Badge can be retrieved from the GloBI Review Depot↩︎ Up-to-date status of the GloBI Index Badge can be retrieved from GloBI's API↩︎ At time of writing (2026-02-03) the version of the GloBI dataset index was available at https://globalbioticinteractions.org/datasets↩︎ According to http://opendefinition.org/: "Open data is data that can be freely used, re-used and redistributed by anyone - subject only, at most, to the requirement to attribute and sharealike."↩︎

Life on Earth is sustained by complex interactions between organisms and their environment. These biotic interactions can be captured in datasets and published digitally. We present a review and archiving process for such an openly accessible digital interactions dataset of known origin and discuss its outcome. The dataset under review, named millerse/Dapstrom-integrated-database-and-portal-for-fish-stomach-records, has fingerprint hash://md5/569ae0feab6ee2248e67be6f5ca94786, is 32.6MiB in size and contains 225,564 interactions with 1 unique type of association (e.g., eats) between 187 primary taxa (e.g., GADUS MORHUA) and 1,268 associated taxa (e.g., EMPTY). This report includes detailed summaries of interaction data, a taxonomic review from multiple catalogs, and an archived version of the dataset from which the reviews are derived.