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ZENODO
Software . 2025
License: CC BY
Data sources: ZENODO
ZENODO
Software . 2026
License: CC BY
Data sources: Datacite
ZENODO
Software . 2025
License: CC BY
Data sources: Datacite
ZENODO
Software . 2026
License: CC BY
Data sources: Datacite
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Multiomics-Analytics-Group/abaco: ABaCO 0.1.1

Authors: Edir Sebastián Vidal Castro; Angel; Sebastián Ayala Ruano;

Multiomics-Analytics-Group/abaco: ABaCO 0.1.1

Abstract

Summary This release includes updates to the source code and documentation for a better understanding of the model's implementation. It specifically adds comprehensive notebooks for computational performance benchmarking and multi-study correction analysis. 📄 New Notebooks Performance Benchmarking and Fine-tuning example: Added docs/tutorial/report-performance.ipynb. Example using a simulated dataset on fine-tuning the loss weights with a small subset of the training data. Provides detailed evaluation of wall-clock running times and peak GPU memory usage. Multi-studies Case: Added docs/tutorial/demo-parkinson.ipynb. Demonstrates model performance on a composite of 9 studies dataset (merging multiple test cases). Validates the preservation of biological signals without adding biases in high-heterogeneity settings. Inflammatory Bowel Disease Case Study: Added docs/tutorial/tutorial-ibd.ipynb. Added the implementation of the Inflammatory Bowel Disease (IBD) case study as a tutorial notebook. Dealing with outlier training runs for analysis of problematic taxonomic groups. 🛠 Source Changes Fixed a bug that wasn't allowing the use of the VMM prior configuration at metaABaCo().

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
0
Average
Average
Average