This release updates the logic for how Autocycler resolve chooses the best path when creating bridges. Previously, it simply chose the most common path, but this was sometimes suboptimal at loci where the input assemblies are very diverse. Now it chooses the medoid (the path with the minimum distance to all other paths) which should be more robust. Tarballs of pre-built executable binaries are attached: Linux: autocycler-linux-x86_64-musl-v0.6.0.tar.gz: x86-64 processors, musl C standard library autocycler-linux-x86_64-gnu-v0.6.0.tar.gz: x86-64 processors, glibc C standard library I recommend trying the musl version first, as it's more portable. However, if you encounter a memory allocation crash, then try the gnu version. Macs: autocycler-macos-x86_64-v0.6.0.tar.gz: x86-64 Intel processors autocycler-macos-aarch64-v0.6.0.tar.gz: Apple silicon processors An HTML copy of the Autocycler docs at the time of release is also attached: autocycler-documentation-v0.6.0.tar.gz

If you use this software, please cite the associated preprint listed below.