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AlexsLemonade/OpenScPCA-analysis: 2025-10-06

integration_instructionsResearch softwarekeyboard_double_arrow_right Software 20 Aug 2025Publisher:Zenodo
Authors: Stephanie J. Spielman; Ally Hawkins; Joshua Shapiro; Jaclyn Taroni; Maud Plaschka; Jen O'Malley; UTSouthwesternDSSR; +6 Authors
Code repository: https://github.com/AlexsLemonade/OpenScPCA-analysis/tree/2025-10-06

doi: 10.5281/zenodo.17279359 , 10.5281/zenodo.18459136 , 10.5281/zenodo.17144697 , 10.5281/zenodo.17533907 , 10.5281/zenodo.16911588 , 10.5281/zenodo.17145433 , 10.5281/zenodo.17063241 , 10.5281/zenodo.12806467

AlexsLemonade/OpenScPCA-analysis: 2025-10-06

Abstract

What's Changed Add scimilarity annotations to assigning consensus cell types by @allyhawkins in https://github.com/AlexsLemonade/OpenScPCA-analysis/pull/1323 Remove spaces from diagnosis celltypes file by @sjspielman in https://github.com/AlexsLemonade/OpenScPCA-analysis/pull/1322 Compare SCimilarity results to existing consensus cell type annotations by @allyhawkins in https://github.com/AlexsLemonade/OpenScPCA-analysis/pull/1321 Fix typos for release by @allyhawkins in https://github.com/AlexsLemonade/OpenScPCA-analysis/pull/1329 Changelog for v0.2.3 by @allyhawkins in https://github.com/AlexsLemonade/OpenScPCA-analysis/pull/1331 Account for multiple sample types in consensus cell type assignment by @allyhawkins in https://github.com/AlexsLemonade/OpenScPCA-analysis/pull/1332 Make sure the new modules are included in the run all workflow by @allyhawkins in https://github.com/AlexsLemonade/OpenScPCA-analysis/pull/1334 GHA infercnv module fixes by @sjspielman in https://github.com/AlexsLemonade/OpenScPCA-analysis/pull/1336 Add notebook comparing consensus cell type outputs by @allyhawkins in https://github.com/AlexsLemonade/OpenScPCA-analysis/pull/1339 Add duckplyr to consensus renv for use with validation notebooks by @allyhawkins in https://github.com/AlexsLemonade/OpenScPCA-analysis/pull/1340 Add leukemias to dictionary by @sjspielman in https://github.com/AlexsLemonade/OpenScPCA-analysis/pull/1343 Clean up assigning consensus cell type script by @allyhawkins in https://github.com/AlexsLemonade/OpenScPCA-analysis/pull/1337 Regenerate validation notebooks by @allyhawkins in https://github.com/AlexsLemonade/OpenScPCA-analysis/pull/1344 Replace rols in renv by @allyhawkins in https://github.com/AlexsLemonade/OpenScPCA-analysis/pull/1348 Use ontologyIndex to grab CL ids by @allyhawkins in https://github.com/AlexsLemonade/OpenScPCA-analysis/pull/1349 Add cell-type-scimilarity to build all docker images by @allyhawkins in https://github.com/AlexsLemonade/OpenScPCA-analysis/pull/1350 Full Changelog: https://github.com/AlexsLemonade/OpenScPCA-analysis/compare/2025-09-05...2025-10-06

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
0
Average
Average
Average
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