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Benchmarking-Initiative/Benchmark-Models-PEtab: Benchmark Models PEtab v2026.01.24

Authors: Polina Lakrisenko; Dilan Pathirana; Maren Philipps; Daniel Weindl; Fabian Fröhlich; Elba Raimúndez; Paul Lang; +12 Authors

Benchmarking-Initiative/Benchmark-Models-PEtab: Benchmark Models PEtab v2026.01.24

Abstract

What's Changed Add .git_archival.txt by @dweindl in https://github.com/Benchmarking-Initiative/Benchmark-Models-PEtab/pull/255 add the reformulated version of Fiedler_BMCSystBiol2016 by @m-philipps in https://github.com/Benchmarking-Initiative/Benchmark-Models-PEtab/pull/258 Fix observable definition by @FFroehlich in https://github.com/Benchmarking-Initiative/Benchmark-Models-PEtab/pull/261 add new references by @plakrisenko in https://github.com/Benchmarking-Initiative/Benchmark-Models-PEtab/pull/262 Deploy to pages by @dweindl in https://github.com/Benchmarking-Initiative/Benchmark-Models-PEtab/pull/265 pages: Add overview table by @dweindl in https://github.com/Benchmarking-Initiative/Benchmark-Models-PEtab/pull/266 pages: replace URLs by icons by @dweindl in https://github.com/Benchmarking-Initiative/Benchmark-Models-PEtab/pull/267 Rename xml files by @stephanmg in https://github.com/Benchmarking-Initiative/Benchmark-Models-PEtab/pull/269 Bump actions/checkout from 4 to 5 by @dependabot[bot] in https://github.com/Benchmarking-Initiative/Benchmark-Models-PEtab/pull/271 Bump actions/upload-pages-artifact from 3 to 4 by @dependabot[bot] in https://github.com/Benchmarking-Initiative/Benchmark-Models-PEtab/pull/272 Bump actions/setup-python from 5 to 6 by @dependabot[bot] in https://github.com/Benchmarking-Initiative/Benchmark-Models-PEtab/pull/273 Add get_simulation_df by @dweindl in https://github.com/Benchmarking-Initiative/Benchmark-Models-PEtab/pull/274 Fix simulation files by @dweindl in https://github.com/Benchmarking-Initiative/Benchmark-Models-PEtab/pull/276 Add CODEOWNERS by @dweindl in https://github.com/Benchmarking-Initiative/Benchmark-Models-PEtab/pull/282 Fix Lucarelli_CellSystems2018 simulation table by @dweindl in https://github.com/Benchmarking-Initiative/Benchmark-Models-PEtab/pull/281 Sneyd model updates by @plakrisenko in https://github.com/Benchmarking-Initiative/Benchmark-Models-PEtab/pull/285 Beer model fixes by @plakrisenko in https://github.com/Benchmarking-Initiative/Benchmark-Models-PEtab/pull/283 Visualization fixes by @plakrisenko in https://github.com/Benchmarking-Initiative/Benchmark-Models-PEtab/pull/284 Lucarelli visualization by @plakrisenko in https://github.com/Benchmarking-Initiative/Benchmark-Models-PEtab/pull/286 Visualization fixes for some benchmark models. by @stephanmg in https://github.com/Benchmarking-Initiative/Benchmark-Models-PEtab/pull/289 Vis fixes #2 by @stephanmg in https://github.com/Benchmarking-Initiative/Benchmark-Models-PEtab/pull/290 add visualization spec for Raimundez model by @plakrisenko in https://github.com/Benchmarking-Initiative/Benchmark-Models-PEtab/pull/288 add Blasi visualization spec by @plakrisenko in https://github.com/Benchmarking-Initiative/Benchmark-Models-PEtab/pull/291 Zheng model visualization spec by @plakrisenko in https://github.com/Benchmarking-Initiative/Benchmark-Models-PEtab/pull/294 Bump actions/checkout from 5 to 6 by @dependabot[bot] in https://github.com/Benchmarking-Initiative/Benchmark-Models-PEtab/pull/295 GHA: Add simulation workflow by @dweindl in https://github.com/Benchmarking-Initiative/Benchmark-Models-PEtab/pull/296 Simplify Froehlich_CellSystems2018 condition table by @dweindl in https://github.com/Benchmarking-Initiative/Benchmark-Models-PEtab/pull/293 Bump actions/checkout from 5 to 6 by @dependabot[bot] in https://github.com/Benchmarking-Initiative/Benchmark-Models-PEtab/pull/297 Add two references by @m-philipps in https://github.com/Benchmarking-Initiative/Benchmark-Models-PEtab/pull/298 Update install instruction in checklist by @m-philipps in https://github.com/Benchmarking-Initiative/Benchmark-Models-PEtab/pull/299 add new model Liu_IFACPapersOnLine2025 by @m-philipps in https://github.com/Benchmarking-Initiative/Benchmark-Models-PEtab/pull/260 Fix simulation Weber_BMC2015 by @m-philipps in https://github.com/Benchmarking-Initiative/Benchmark-Models-PEtab/pull/300 Full Changelog: https://github.com/Benchmarking-Initiative/Benchmark-Models-PEtab/compare/v2024.11.11...v2026.01.24

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    This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
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    popularity
    This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
    Top 10%
    influence
    This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
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    impulse
    This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
1
Top 10%
Average
Average