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epi2me-labs/wf-metagenomics: v2.14.2

Authors: Natalia Garcia Garcia; Chris Wright; Sarah Griffiths; nanofriend; Sam Nicholls; Matthew Parker; Chris Alder; +2 Authors

epi2me-labs/wf-metagenomics: v2.14.2

Abstract

Changed Updated to wf-template v5.7.0 to maintain compliance with our latest wf-template standard, changing: Pipeline overview now appears before pipeline parameters in README. ezCharts plotting library has been updated to 0.15.1, there are no user facing changes to plots. Fastcat FASTQ pre-processing program has been updated to 0.24.2, it is more robust to malformed FASTQ input. CHANGELOG to be compliant with our formatting rules. Added Greengenes2 database: the database used in the recent ZymoBIOMICS Microbial Communities with 16S dataset blog post is now available as "Greengenes2_plus". Workflow overview diagram in the documentation. Comprehensive database reference table to the README with citations and resource links. Fixed Missing ranks when the user-selected taxonomic_rank was deeper than the maximum rank available for a given taxon in the database.

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
0
Average
Average
Average