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Software . 2026
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Exploring the regulatory potential of RNA structures in 202 cyanobacterial genomes

integration_instructionsResearch softwarekeyboard_double_arrow_right Software 25 Sep 2024Publisher:Zenodo
Authors: Geissler, Adrian S; Anthon, Christian; Carrasquer-Álvarez, Elena; Frigaard, Niels-Ulrik; Gorodkin, Jan; Seemann, Stefan E;
Code repository: https://github.com/seemannlab/OCyRS-pipeline/tree/NAR-03029-Z-2024.R2

doi: 10.5281/zenodo.18301693 , 10.5281/zenodo.12683511 , 10.5281/zenodo.12683510 , 10.5281/zenodo.18301692

Exploring the regulatory potential of RNA structures in 202 cyanobacterial genomes

Abstract

The authors conducted a comparative genomic study across 202 cyanobacterial genomes that aimed at predicting novel conserved RNA structures associated with orthologous genes. This repository contains the Snakemake pipeline, all computational result including those from intermediate steps, and the used software as singularity containers used in this study. In addition, it contains data analysis performed on the output of the OCyRS workflow which resulted in the scientific publication.

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
0
Average
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Average