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OpenOmics/chrom-seek: Version 2.2.0

integration_instructionsResearch softwarekeyboard_double_arrow_right Software 07 Nov 2025Publisher:Zenodo
Authors: Ryan Routsong; Asya Khleborodova; Skyler Kuhn; Tovah Markowitz;
Code repository: https://github.com/OpenOmics/chrom-seek/tree/v2.2.0

doi: 10.5281/zenodo.17726146 , 10.5281/zenodo.18261672 , 10.5281/zenodo.18808353 , 10.5281/zenodo.17713960 , 10.5281/zenodo.17553945 , 10.5281/zenodo.18633183 , 10.5281/zenodo.18246544 , 10.5281/zenodo.16921008 , 10.5281/zenodo.17725768 , 10.5281/zenodo.18499589

OpenOmics/chrom-seek: Version 2.2.0

Abstract

MultiQC report revamp Update of multiQC version used to v1.32 via sif container Complete recreation of the multiQC yaml in references (changes include splitting modules, changing flow, and adding manual descriptions) Addition to multiQC report of: Encode QC metrics, interactive enhancer profile plots (when created), interactive Spearman correlation plot, interactive TSS profile plots Also includes a minor bug fix so that DiffBind_QC rules do not rerun every run of the pipeline Continuous Integration Adding multiple CI components to harden pipeline check version auto release snakevis on release

  • BIP!
    Impact byBIP!
    selected citations
    These citations are derived from selected sources.
    This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    		 0
    popularity
    This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
    		 Average
    influence
    This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    		 Average
    impulse
    This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
    		 Average
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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
0
Average
Average
Average