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FAIRSCAPE CLI

Authors: Levinson, Maxwell Adam; Al Manir, Sadnan; Clark, Timothy;
Abstract

FAIRSCAPE is a FAIRness and AI-readiness service providing deep provenance graphs and data dictionaries with data element validation on uploaded data, software, and computations, with special reference to biomedical datasets. FAIRSCAPE provenance graphs are represented using the Evidence Graph Ontology, EVI, an OWL2 representation derived from W3C PROV and specialized for biomedical research data. The FAIRSCAPE server is a cloud-ready environment that processes RO-Crate data+metadata packages produced by the FAIRSCAPE CLI- and GUI-based clients, registers them with persistent IDs, decomposes and registers their components, computes provenance graph entailments of each component, and integrates the provenance graphs. FAIRSCAPE server provides a web-based GUI for inspecting metadata, visualizing provenance graphs, and obtaining downloads packaged as RO-Crates. FAIRSCAPE is supported by the U.S. National Institutes of Health Bridge2AI program under grants OT2OD032742 [Bridge2AI: Cell Maps for AI (CM4AI) Data Generation Project] and OT2OD032701 [Bridge2AI: Patient-Focused Collaborative Hospital Repository Uniting Standards (CHoRUS) for Equitable AI], and by the Frederick Thomas Fund of the University of Virginia.

If you use this software, please cite it using the metadata from this file.

Related Organizations
Keywords

Ontology, Provenance, Data Science, EVI, FAIR

  • BIP!
    Impact byBIP!
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    This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
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    popularity
    This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
    Average
    influence
    This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
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    This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
0
Average
Average
Average