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ZENODO
Preprint . 2025
License: CC BY
Data sources: ZENODO
ZENODO
Preprint . 2025
License: CC BY
Data sources: Datacite
ZENODO
Preprint . 2025
License: CC BY
Data sources: Datacite
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Structural Modeling: Triplet-Axis Assembly Assessment

Authors: Rizzo, Daniel;

Structural Modeling: Triplet-Axis Assembly Assessment

Abstract

Abstract CCR5 antagonism, PD-L1 modulation, and broadly neutralizing antibodies (bN- Abs) represent complementary axes in immune modulation and viral control. To eval- uate whether these axes could physically co-assemble as a structural triplet, curated Protein Data Bank (PDB) structures for CCR5 (4MBS), PD-L1 (8GAD), and a PD- L1-targeted nanobody (5DXW) were analyzed using UCSF ChimeraX (daily build, 2025-10-13, macOS). Manual alignment and visual inspection identified no sterically permissible three-body geometry, suggesting that a direct CCR5–PD-L1–bNAb com- plex is structurally improbable. These observations support the interpretation that synergy across these axes occurs indirectly through regulatory and signaling interac- tions rather than physical co-binding. Full report and figures are included in the attached PDF.

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    This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    0
    popularity
    This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
    Average
    influence
    This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    Average
    impulse
    This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
0
Average
Average
Average
Green