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Other literature type . 2025
License: CC BY
Data sources: ZENODO
ZENODO
Other literature type . 2025
License: CC BY
Data sources: Datacite
ZENODO
Other literature type . 2025
License: CC BY
Data sources: Datacite
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URT in Biology: Efficiency, Folding Funnels, Replication Fidelity, and Molecular Motor Dynamics

Authors: Morgan Baggs;

URT in Biology: Efficiency, Folding Funnels, Replication Fidelity, and Molecular Motor Dynamics

Abstract

This paper presents an empirical translation of Unified Recursion Theory (URT) into biological systems. Rather than introducing new biological models or mechanisms, it maps existing experimental measurements in molecular and cellular biology onto the universal URT variables of informational stiffness (σ) and recursion efficiency (λ). Biological processes such as protein folding, enzyme catalysis, RNA folding, DNA replication, molecular motor stepping, and cellular metabolism are treated as discrete physical state transitions. Each transition carries a measurable energetic cost and entropy change, allowing direct comparison with the URT proportionality relation between energy expenditure and informational change. Free-energy landscapes widely used in biophysics are interpreted geometrically, with stiffness corresponding to landscape curvature. Measured biological efficiencies—folding yields, catalytic turnover, motor work efficiency, and replication fidelity costs—are identified directly with the recursion efficiency λ. Across all systems examined, efficiencies cluster within bounded intermediate ranges, consistent with finite stiffness rather than near-reversible or frozen dynamics. A central result is the distinction between passive and active recursion regimes. Passive systems terminate recursion through constraint excess as stiffness diverges. Biological systems, by contrast, require continuous energy throughput to maintain finite stiffness. Recursion terminates in biology through energy limitation, when available metabolic input is insufficient to sustain structured landscapes against entropic decay. The paper introduces no new physical laws and does not imply biological optimization. URT predicts bounded efficiency bands imposed by landscape geometry and energetic constraint, not optimal design. Biological measurements are shown to be consistent with the empirically convergent efficiency scale λ₀ identified in prior URT work; biology constrains this convergence but does not define it. Falsifiable predictions are presented, including efficiency–temperature scaling, landscape-modification responses, load-dependent motor behavior, fidelity–energy tradeoffs, and maintenance-energy thresholds. Agreement across these tests supports URT universality in living systems; systematic deviation would falsify the framework in this domain. This paper establishes biology as a primary empirical validation domain for Unified Recursion Theory and completes the cross-domain extension of URT from quantum and gravitational systems into real, actively maintained physical systems. URT PAPER FAMILY This work forms part of the Unified Recursion Theory (URT) research program, which develops a cross-domain framework for physical evolution based on constrained informational recursion and an energy–entropy proportionality law. Each paper in the series is self-contained, while collectively establishing the theoretical structure across quantum, geometric, biological, cosmological, and particle-level domains. Related URT works available on Zenodo: FOUNDATIONAL PAPERS 1. Unified Recursion Theory — Core Framework (URT Core) DOI: 10.5281/zenodo.17642761Record: https://zenodo.org/records/17642761 2. Discrete Admissible Regimes in Unified Recursion Theory: Operator Closure, Constraint Topology, and the Necessity of Five Operators DOI: 10.5281/zenodo.18148192Record: https://zenodo.org/records/18148193 3. Informational Field Theory in Strong Curvature (IFT-SC) DOI: 10.5281/zenodo.17850379Record: https://zenodo.org/records/17850379 4. Dynamical Evolution of the Informational Stiffness Field (ISW Theory) DOI: 10.5281/zenodo.17860533Record: https://zenodo.org/records/17860533 RESOLUTION PAPERS (PHYSICAL PARADOXES) 5. Informational Recursion and the Dissolution of the Black Hole Information Paradox DOI: 10.5281/zenodo.17868662Record: https://zenodo.org/records/17868662 6. ORM and the Quantum Measurement Problem (ORM) DOI: 10.5281/zenodo.17881944Record: https://zenodo.org/records/17881944 BRIDGING / CONSTRAINT PAPER 7. Distinguishability Geometry in Informational State Space DOI: 10.5281/zenodo.17957062Record: https://zenodo.org/records/17957062 Provides the geometric foundation for informational state space.Underpins the emergence of spacetime, efficiency universality, and landscape geometry. THEORETICAL EXPANSION PAPERS 8. Emergent Spacetime from Informational Recursion DOI: 10.5281/zenodo.17885555Record: https://zenodo.org/records/17885555 9. λ-Universality Across Scales (λ-UAS) DOI: 10.5281/zenodo.17934065Record: https://zenodo.org/records/17934065 10. Free-Energy Landscape Geometry in Unified Recursion Theory DOI: 10.5281/zenodo.17940995Record: https://zenodo.org/records/17940995 BIOLOGY / COMPLEXITY PAPER 11. URT in Biology: Efficiency, Folding Funnels, Replication Fidelity, and Molecular Motor Dynamics DOI: 10.5281/zenodo.17945209Record: https://zenodo.org/records/17945209 COSMOLOGICAL EXTENSIONS 12. Cyclic Cosmology from Informational Recursion DOI: 10.5281/zenodo.17955043Record: https://zenodo.org/records/17955043 13. Antimatter as Inverse Recursion: Temporal Operator Asymmetry and Matter–Antimatter Imbalance in Unified Recursion Theory DOI: 10.5281/zenodo.17955043Record: https://zenodo.org/records/17955625

Keywords

Protein Folding, Thermodynamic constraints, recursion efficiency, Free-energy landscapes, Unified Recursion Theory, RNA folding, Biological efficiency, replication fidelity, Active maintenance systems, enzyme catalysis, Informational stiffness, molecular motors

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
0
Average
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Average