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Claim

imgag/ngs-bits: 2025_07

integration_instructionsResearch softwarekeyboard_double_arrow_right Software 25 Nov 2024Publisher:Zenodo
Authors: Marc Sturm; Alexandr Chernov; Leon Schütz; Axel Gschwind; Alexander Ott; c-schroeder; Florian Lenz; +10 Authors
Code repository: https://github.com/imgag/ngs-bits/tree/2025_07

doi: 10.5281/zenodo.16676392 , 10.5281/zenodo.14216718 , 10.5281/zenodo.17201254 , 10.5281/zenodo.14216792 , 10.5281/zenodo.14747530 , 10.5281/zenodo.17877407 , 10.5281/zenodo.15051584 , 10.5281/zenodo.15051361 , 10.5281/zenodo.14216719 , 10.5281/zenodo.15542696

imgag/ngs-bits: 2025_07

Abstract

Changes: FastqTrim: added parameter -max_len. NGSDAddVariantsGermline: now always overrides imported variants if there is no report config of the respective variant type. NGSDExtractRNACohort: added parameter -only_samples. TrioMaternalContamination: Code refactoring and speed-up. VariantFilterAnnotations: Made input and output files optional (for use in pipes). VcfCheck: added parameter -duplicates. general bug fixes and more Qt6 adaptations updated htslib for Linux from 1.16 to 1.22.1 NGSD: analysis_job table: added use_dragen flag expression_exon table: changed type of id field to BIGINT Full Changelog at: https://github.com/imgag/ngs-bits/compare/2025_05...2025_07 Note: Please do not use the auto-generated 'Source code' packages - they will not work!

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    selected citations
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    This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    		 3
    popularity
    This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
    		 Top 10%
    influence
    This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
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    This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
3
Top 10%
Average
Average