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ZENODO
Dataset . 2021
License: CC BY
Data sources: ZENODO
ZENODO
Dataset . 2021
License: CC BY
Data sources: Datacite
ZENODO
Dataset . 2021
License: CC BY
Data sources: Datacite
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kraken2 database of marine animal genomes, for host decontamination

Authors: Angelova, Angelina;

kraken2 database of marine animal genomes, for host decontamination

Abstract

kraken2 database of common marine animal hosts in marine metagenomic dataset. Used in Nephele pipelines for decontamination of metagenomic datasets from common marine animal host reads (database inclusive of human genome). Content of assemblies: Homo sapiens (GRCh38.p13), Conus ventricosus (ASM1839881v1), Crassostrea virginica (C_virginica-3.0) , Crassostrea gigas (cgigas_uk_roslin_v1), Mytilus galloprovincialis (MGAL_10), Octopus sinensis (ASM634580v1), Paraescarpia echinospica (HKBU_Pec_v1), Streblospio benedicti (ASM1909598v1), Hyalella azteca (Hazt_2.0.2), Amphibalanus amphitrite (NRLGWU_Aamphi_draft), Paramacrobiotus sp. TYO (Prichtersi_v1.0), Hypsibius dujardini (ASM157998v1), Lytechinus pictus (UCSD_Lpic_2.0), Strongylocentrotus purpuratus (Spur_5.0), Apostichopus parvimensis (Ppar_1.0), Hydra vulgaris (Hydra_105_v3), Hydra viridissima (ASM1470644v1), Pocillopora damicornis (ASM370409v1), Amphimedon queenslandica (assembly v1.0)

Keywords

nephele, Whole Genome Sequencing, Gastrointestinal Microbiome

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
0
Average
Average
Average