
kraken2 database of common marine animal hosts in marine metagenomic dataset. Used in Nephele pipelines for decontamination of metagenomic datasets from common marine animal host reads (database inclusive of human genome). Content of assemblies: Homo sapiens (GRCh38.p13), Conus ventricosus (ASM1839881v1), Crassostrea virginica (C_virginica-3.0) , Crassostrea gigas (cgigas_uk_roslin_v1), Mytilus galloprovincialis (MGAL_10), Octopus sinensis (ASM634580v1), Paraescarpia echinospica (HKBU_Pec_v1), Streblospio benedicti (ASM1909598v1), Hyalella azteca (Hazt_2.0.2), Amphibalanus amphitrite (NRLGWU_Aamphi_draft), Paramacrobiotus sp. TYO (Prichtersi_v1.0), Hypsibius dujardini (ASM157998v1), Lytechinus pictus (UCSD_Lpic_2.0), Strongylocentrotus purpuratus (Spur_5.0), Apostichopus parvimensis (Ppar_1.0), Hydra vulgaris (Hydra_105_v3), Hydra viridissima (ASM1470644v1), Pocillopora damicornis (ASM370409v1), Amphimedon queenslandica (assembly v1.0)
nephele, Whole Genome Sequencing, Gastrointestinal Microbiome
nephele, Whole Genome Sequencing, Gastrointestinal Microbiome
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