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ZENODO
Software . 2025
License: http://opensource.org/licenses/MIT
Data sources: ZENODO
ZENODO
Software . 2026
License: https://opensource.org/licenses/MIT
Data sources: Datacite
ZENODO
Software . 2025
License: https://opensource.org/licenses/MIT
Data sources: Datacite
Claim

SequAna-Ukon/TrueOrtho: 2.0

integration_instructionsResearch softwarekeyboard_double_arrow_right Software 09 Dec 2025Publisher:Zenodo
Authors: Sharaf, Abdoallah; Voolstra, Christian R.;
Code repository: https://github.com/SequAna-Ukon/TrueOrtho/tree/initial

doi: 10.5281/zenodo.21789519 , 10.5281/zenodo.17867442

SequAna-Ukon/TrueOrtho: 2.0

Abstract

TrueOrtho 2.0 is an expanded Nextflow pipeline for automated, structural- and embedding-aware orthology identification across multiple species. In addition to traditional sequence homology and domain architecture filtering, version 2.0 integrates deep-learning structural embeddings (ESM-2), 3D structural alignment scores (Foldseek), and automated phylogenetic trees (IQ-TREE) into a unified evidence matrix.

Keywords

genomics, pipeline, ortholog

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
0
Average
Average
Average