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License: CC BY SA
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License: CC BY SA
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Software . 2025
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Guide to Reproducible Code

Authors: Cooper, Natalie; Hsing, Pen-Yuan; Almarzouq, Batool; Baldauf, Selina; Chatterjee, Nilanjan; Plomp, Esther; Strydom, Tanya; +2 Authors

Guide to Reproducible Code

Abstract

This is the Quarto version of the 2nd edition of British Ecological Society's "Guide to Reproducible Code". A print version of this guide has also been published as a PDF file on Zenodo. The rendered website is here: https://bes-guide.github.io/reproducible-code/ Assuming you already know the basics of programming (such as in the languages R or Python), this guide will show you how to publish the code you write so that it is reprodicible and FAIR for others (and your future self!). Editors: @nhcooper123, @penyuan Authors: @batoolmm, @selinaZitrone, @nilanjanchatterjee, @estherplomp, @tanyas08, @ETakola, @zuzannazagrodzka

If you use this software, please cite it using the metadata from this file. Note that Natalie Cooper and Pen-Yuan Hsing are the editors of this guide but are listed along with the authors because of limitations to the CITATION.cff format. The publisher of this guide is the British Ecological Society.

  • BIP!
    Impact byBIP!
    selected citations
    These citations are derived from selected sources.
    This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    0
    popularity
    This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
    Average
    influence
    This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    Average
    impulse
    This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
    Average
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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
0
Average
Average
Average