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ZENODO
Dataset . 2025
License: CC BY
Data sources: ZENODO
ZENODO
Dataset . 2025
License: CC BY
Data sources: Datacite
ZENODO
Dataset . 2025
License: CC BY
Data sources: Datacite
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AnnoTEP-DB (Annotation of Transposable Elements in Plants Database - Frozen Release, v1.0): A Precomputed Repository for Lineage-Level Plant Transposable Elements Annotation

Authors: Fernando Soares Costa, Marcos; Varani, Alessandro; Augusto Carvalho de Abreu, Vinicius;

AnnoTEP-DB (Annotation of Transposable Elements in Plants Database - Frozen Release, v1.0): A Precomputed Repository for Lineage-Level Plant Transposable Elements Annotation

Abstract

AnnoTEP-DB (Frozen Release, v1.0): A Precomputed Repository for Lineage-Level Plant Transposable Elements Annotation This Zenodo record provides a frozen, versioned snapshot of the AnnoTEP-DB resource — a comprehensive database of precomputed transposable element (TE) annotations and lineage-level classifications originally spanning 75 plant and algal genomes. The full database (≈650 GB) exceeds Zenodo's 50 GB per-record storage limit. Therefore, this deposit includes a curated subset of representative genome-level archives, selected from the full collection to maximize phylogenetic diversity and ensure reproducibility of the main AnnoTEP-DB features. The database was generated using the EDTA-GUI pipeline integrated with REXdb and RepeatModeler2, enabling lineage-aware TE classification, visualization, and comparative exploration across major plant clades. To ensure long-term accessibility and reproducibility, the resource was restructured into two components: AnnoTEP-DB-Interface.tar.gz — the complete interactive web interface (HTML, PHP, JavaScript, DataTables) required to deploy or browse AnnoTEP-DB locally; Selected genome-level archives (.7z) — each containing the TE annotation outputs for a specific species, including FASTA and GFF3 files, summary tables, repeat landscapes, and TE lineage trees. Each .7z genome archive (e.g., A_thaliana.7z, T_grandiflorum174.7z, Z_mays.7z) represents a complete standalone dataset comprising: consensus TE libraries and genomic coordinates; classification statistics by order, superfamily, and lineage; repeat landscapes and insertion age profiles; auxiliary visualization files and EDTA-GUI summary reports. This frozen snapshot preserves the interface and the selected genome datasets in a format that remains fully accessible even without continued hosting. Repository structure AnnoTEP-DB-Interface.tar.gz — frozen interactive interface Selected genome archives in .7z format (subset of the original 75 genomes) Total compressed size of this deposit: ≤ 50 GB (Zenodo limit)Original full database size: ≈ 650 GBAnnotation pipeline: EDTA-GUI v2.1 File formats: .tar.gz, .7zLicense: Creative Commons Attribution 4.0 (CC BY 4.0)DOI of this release: 10.5281/zenodo.17753532 Reconstruction of the split Z_mays archive The Z_mays dataset exceeded Zenodo’s file-size constraints and was therefore uploaded in multiple parts.To reconstruct the original archive, download all parts into the same folder and run: cat Z_mays.7z.part_* > Z_mays.7z7z x Z_mays.7z After extraction, the genome files can be placed in the directory/src/assets/pagesto enable full functionality of the AnnoTEP-DB interface.

Keywords

plant genomics, evolution, comparative genomics, transposable elements

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
0
Average
Average
Average