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ZENODO
Dataset . 2025
License: CC BY
Data sources: ZENODO
ZENODO
Dataset . 2025
License: CC BY
Data sources: Datacite
ZENODO
Dataset . 2025
License: CC BY
Data sources: Datacite
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Pretrained DeepLabCut model and analysis scripts for adult zebrafish behavioral tracking

Authors: Keerthisinghe, Pramuk; Orengo, James;

Pretrained DeepLabCut model and analysis scripts for adult zebrafish behavioral tracking

Abstract

This repository contains the pretrained DeepLabCut (DLC) model, example data, and analysis script associated with the STAR Protocol: "Protocol for quantitative analysis of adult zebrafish swimming behavior using DeepLabCut" The pretrained model enables users to analyze adult zebrafish swimming videos without performing any model training, making this workflow accessible to researchers with no machine-learning experience. Included in this deposit are: the trained DLC model (snapshot, config, and pose_cfg files) an example raw video, an example DLC-labeled video, and the corresponding CSV output a Python analysis script for generating behavioral metrics (distance traveled, zone occupancy, and heatmaps) a README file describing how to load the model in DeepLabCut and how to use the analysis script This dataset supports the reproducibility of the protocol and enables immediate use of the model for quantitative zebrafish behavioral analysis. 

Related Organizations
Keywords

FOS: Computer and information sciences, Animal Behavior, Bioinformatics, Behavioral tracking, Machine learning, DeepLabCut, Computational Biology, Zebrafish, Pose estimation, Neuroscience

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
0
Average
Average
Average