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ZENODO
Dataset . 2025
License: CC BY
Data sources: ZENODO
ZENODO
Dataset . 2025
License: CC BY
Data sources: Datacite
ZENODO
Dataset . 2025
License: CC BY
Data sources: Datacite
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Unified Human Gut Virome (UHGV)

Authors: Nayfach, Stephen; Camargo, Antonio;

Unified Human Gut Virome (UHGV)

Abstract

The UHGV is a comprehensive genomic resource of viruses from the human gut microbiome. Genomes were derived from 12 independent data sources and annotated using a uniform bioinformatics pipeline. The files in this repository, which are described below, contain the most relevant data for most users. For the remaining data, please see: https://uhgv.jgi.doe.gov/downloads File Description uhgv_full.fna.zst Genomic sequences of all viruses (n=873,995) in UHGV, including the ones with uncertain virus prediction uhgv_full.faa.zst Protein sequences (n=37,443,649) of all viruses in UHGV, including the ones with uncertain virus prediction votus_full.fna.zst Genomic sequences of vOTU representatives (n=168,536) votus_full.faa.zst Protein sequences (n=7,426,124) of vOTU representatives uhgv_metadata.tsv.zst Metadata for each of the 873,995 UHGV genomes votus_metadata_extended.tsv.zst Metadata for the 168,536 species-level viral clusters (vOTUs) source_biosample_metadata.tsv.zst Information for the samples from which virus genomes were obtained host_range_breadth.tsv.zst Estimated host range breadth for 72,503 vOTUs read_mapping_relative_abundances.tsv.zst Per-sample relative abundances of viruses and hosts derived from read mapping data read_mapping_sample_metadata.tsv.zst Metadata describing the samples used for viral profiling through read mapping (e.g., country, lifestyle, age, gender, BMI, study) read_mapping_study_metadata.tsv.zst Study-level metadata for the sources from which samples were obtained for viral profiling through read mapping

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
0
Average
Average
Average