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Dataset . 2026
License: CC BY
Data sources: Datacite
ZENODO
Dataset . 2026
License: CC BY
Data sources: Datacite
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GDB-20 Database - Part2

Authors: Buehler, Ye; Javor, Sacha; Reymond, Jean-Louis;

GDB-20 Database - Part2

Abstract

About GDB-20 enumerates small organic molecules up to 20 atoms of C, N, O, S, F, Cl, Br, and I following simple chemical stability and synthetic feasibility rules. By combining systematic graph enumeration with machine learning–based generation, we assembled 12,092,137,338 unique molecules as part of the newest GDB-20 database, representing a subset of an estimated 32 trillion possible molecules within this chemical space. How to cite To cite GDB-20, please reference: Ye Buehler, Sacha Javor, and Jean-Louis Reymond. “Sampling a GDB-20 Database of 32 Trillion Drug-Like Molecules by Generative Artificial Intelligence.” ChemRxiv, 2026, https://doi.org/10.26434/chemrxiv.15000288/v1. Dataset DOI: https://doi.org/10.5281/zenodo.17368725. https://doi.org/10.5281/zenodo.17375415. Download You can download the databases and subsets of it using the links provided. All the molecules are stored in canonized SMILES format and compressed as tar/gz archive (for Windows users: Download 7-zip to open archives). GDB-20 (Part1) GDB-20-Set (50 thousand) GDB20.50000.smi.gz 470.05 KB GDB-20-Set (50 million) GDB20.50000000.smi.gz 484.05 MB GDB-20-Set (HAC1-17) GDB20.HAC1-17.tar.gz 2.84 GB GDB-20-Set (HAC18) GDB20.HAC18.tar.gz 13.73 GB GDB-20-Set (HAC19) GDB20.HAC19.tar.gz 17.85 GB GDB-20 (Part2) GDB-20-Set (HAC20) GDB20.HAC20.tar.gz 35.30 GB Terms and conditions: The GDB databases may be downloaded free of charge. In published research involving GDB, cite the appropriate references mentioned above. GDB must not be used as part of or in patents. GDB and large portions thereof must not be redistributed without the express written permission of Jean-Louis Reymond.

Keywords

Generated Database, Virtual Screening, Cheminformatics, Chemical Space, Druglike Small Molecules, In Silico

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
0
Average
Average
Average