Burkholderia cenocepacia data RNA-Seq analysis scripts for Sass et al.

These shell scripts are part of the publication "Genome-widetranscription start site profiling in biofilm-grown Burkholderia cenocepacia J2315" by Andrea Sass et al. (DOI:10.1186/s12864-015-1993-3). Please generate a folder "FASTQ" and add the raw sequences in FASTQ format (deposited at ArrayExpress under the accession number E-MTAB-3381) in that folder. The files should be called the following: RNA_BF1_minus_TEX.fq.bz2 RNA_BF1_plus_TEX.fq.bz2 RNA_BF2_minus_TEX.fq.bz2 RNA_BF2_plus_TEX.fq.bz2 To perform the analysis run ./run_analysis.sh Please make sure that the software is installed and the variable are set accordingly in run_analysis.sh. To install the required software you can use ./install_software.sh

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Keywords

Burkholderia cenocepacia, RNA-Seq

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