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github.com/aofarrel/tree_nine/matUtils_summarize

integration_instructionsResearch softwarekeyboard_double_arrow_right Software 12 May 2025Publisher:Zenodo
Authors: Ash O'Farrell;

doi: 10.5281/zenodo.15391995 , 10.5281/zenodo.18118647 , 10.5281/zenodo.15391990 , 10.5281/zenodo.18112416 , 10.5281/zenodo.17195761 , 10.5281/zenodo.18104706 , 10.5281/zenodo.15391996 , 10.5281/zenodo.18707646 , 10.5281/zenodo.15391988 , 10.5281/zenodo.15391992 , 10.5281/zenodo.15391991 , 10.5281/zenodo.15391989 , 10.5281/zenodo.15635885 , 10.5281/zenodo.15391998 , 10.5281/zenodo.15391994 , 10.5281/zenodo.18810116 , 10.5281/zenodo.15391993 , 10.5281/zenodo.18896086 , 10.5281/zenodo.18134737 , 10.5281/zenodo.16284872 , 10.5281/zenodo.15391997 , 10.5281/zenodo.17344737 , 10.5281/zenodo.17353758

github.com/aofarrel/tree_nine/matUtils_summarize

Abstract

# Summarize This workflows uses `matUtils summarize` to get pretty much all data you'd ever need from an UShER-formatted protobuff (.pb) phylogenetic tree. Outputs include: * Basic summary * Aberrant (-A) * Clades (-A) and sample clades (-C) * Haplotypes (-H) * Mutations (-A) * Samples (-A) * Roho score (-R)

Related Organizations
Keywords

phylogenetics, matutils

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
0
Average
Average
Average